KEGG   Labrenzia sp. VG12: CHH27_13170
Entry
CHH27_13170       CDS       T04984                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K10943  two-component system, response regulator FlrC
Organism
labr  Labrenzia sp. VG12
Pathway
labr02020  Two-component system
labr02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:labr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CHH27_13170
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    CHH27_13170
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:labr02022]
    CHH27_13170
   02035 Bacterial motility proteins [BR:labr02035]
    CHH27_13170
Two-component system [BR:labr02022]
 Other families
  FlrB-FlrC (polar flagellar synthesis)
   CHH27_13170
Bacterial motility proteins [BR:labr02035]
 Flagellar system
  Flagellar assembly proteins
   Others
    CHH27_13170
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 AAA_5 AAA_16 Response_reg AAA_19 AAA_3 MCM AAA AAA_2 HTH_50 TIP49 AAA_7 nSTAND3 DUF3292 HTH_23 TadZ_N HTH_30 MerR ADH_zinc_N HTH_Tnp_ISL3 AAA_22 HTH_28 ATPase AAA_PrkA
Other DBs
NCBI-ProteinID: ASP34076
UniProt: A0A222F615
Position
complement(2800366..2801718)
AA seq 450 aa
MRLLIVGTLGGQLTTASKIAMQSGAQVTHADDVEGALKVLRSGRGADLLMVEVHLDIAGL
IQKLQDERVHVPVVACGIETDAQAAVSAIRAGAKEYIPLPPDPEMIAAVLAAVAQERGDL
IYRDEAMATVVKLAEQVAPSEASVLITGESGTGKEVIARHVHKCSNRASKPFISINCAAI
PEHLLESELFGHEKGAFTGAVARRIGKFEEADGGTLLLDEISEMDVRLQAKLLRAIQERM
IDRVGGTRPVPVNIRILATSNRDLAETVRQGQFREDLLFRLNVVNLKLPALRERPADIME
LAGFFISHYSEANGVPVRPLSAEARQALMSNPWPGNVRELENTMHRAILLANGAEIGVEA
IRMPDGSPLSVSRGPAERAAQTAEAVTRSFVGRTVADVERDLILDTLDHCLGNRTHAAKI
LGISIRTLRNKLNQYTDEGISVPGPGEART
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgcgtctgttaatagtcggaaccctcggcggccaattgaccaccgcttcgaagatcgcc
atgcagagcggggcgcaggtcacccatgcggacgatgtcgagggggccctgaaggttctc
agatcgggccgtggtgccgaccttctgatggtcgaggtgcatctcgacattgccgggctg
atccagaaacttcaggacgaaagggtccacgttccggtcgttgcctgtggtatcgagacc
gatgcccaggccgccgtttcggcgatccgggcaggcgcgaaggaatatatcccgctgccg
ccggatccggaaatgatcgcggccgttctggcggcggttgcccaggaacgcggcgacctg
atctaccgcgacgaggcgatggccaccgtggtcaagctggccgagcaggtggcgccctct
gaagcctccgtgctgatcaccggcgaatccggcacgggcaaggaagtcattgcccgccat
gtgcacaaatgctcgaaccgggcctcgaaacccttcatctcgatcaactgcgccgcgatc
ccggaacatctgcttgaatctgaattgttcggccacgaaaagggcgcctttaccggcgcc
gtggcccggcggatcggcaaattcgaggaagccgacggcggcacactgctcctggacgag
atttccgaaatggatgttcgcctgcaggccaagctgctgcgcgcgatccaggaacggatg
atcgaccgggtgggcggcacacgtcctgttccggtgaatatccgcatcctggcgacttcc
aaccgggatctcgcggaaaccgtgcgccagggtcagtttcgcgaagatctcctgttccgg
ctgaatgtcgtcaatctgaaactgccggcccttcgggagcgtccggcggacatcatggaa
ctcgccggtttcttcatctcccactattcggaggccaacggcgtgccggtgcgtccgttg
tcggccgaagcacgccaggccttgatgagtaacccatggcccggcaacgtccgcgaactg
gaaaacaccatgcaccgggccatcctgctggcaaacggtgctgaaatcggcgttgaagcg
atccgaatgcccgacgggtctccgctgagcgtctccagaggccctgcagaacgggcggcg
cagaccgcggaagcggtgacacggtcctttgtcggccgcacggttgccgatgtggagcgg
gacctcatcctggacacgctggaccattgtctgggcaaccggacccatgcagcgaaaatt
ctgggtatctcgatccggacgctgcgcaacaagctgaatcaatataccgatgaaggtatc
agcgtgcccgggccgggcgaagcccgcacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (26)   
   Pfam (26)   
All databases (36)   

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