KEGG   Labrenzia sp. THAF35: FIU93_28675
Entry
FIU93_28675       CDS       T06351                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
labt  Labrenzia sp. THAF35
Brite
KEGG Orthology (KO) [BR:labt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:labt03009]
    FIU93_28675 (rlmD)
Enzymes [BR:labt01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     FIU93_28675 (rlmD)
Ribosome biogenesis [BR:labt03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    FIU93_28675 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM MTS Cons_hypoth95 Methyltransf_31 Methyltransf_25 Met_10
Other DBs
NCBI-ProteinID: QFT70794
UniProt: A0A9X7WZE5
Position
6153734..6154966
AA seq 410 aa
MSEREIEITTLGHRGDGVAETETGPIYVAGALPGEIVRAKVVDGRAQKPVIEKPSPDRIE
PVCRHYSACGGCSVQHLAEEPYLVWKSGLVEKALRDRGIETEVSGTVAATMGGRRRAVLT
ATRAGRHTLLGYHEKASHRLVDIAECPVLDPVIVEALPGLKSLASEVLPKKGELRMTVLV
TTTGLDVALDKADKGYERKIPALSQKVVDQNLARLSVNGEVILELRPPLLDMGGIGIVAA
PGGFAQATLAAEHALSKLVIDGVGKAKTIADLFSGVGTFALRLGRQANVHAVEGDAAALA
AFDKALRKPQGLKKVTFERRDLSRRPLVKEELEPYDAVVFDPPRAGAQAQAEQLALSKVK
TIVAVSCNPATLARDLRILLDGGYVLQSVTPVDQFHYSPHIEAVAVLTRP
NT seq 1233 nt   +upstreamnt  +downstreamnt
atgagcgagagagagattgaaatcaccacgctcggtcaccgcggcgacggcgttgccgag
acggagaccgggccgatctacgtggccggggccctgcccggggaaatcgtccgggcgaaa
gtcgtggacgggcgcgcccaaaagcctgtgatcgaaaagccgtcaccggaccggatcgaa
cccgtgtgccgtcattactccgcctgcggcggctgttccgtacagcaccttgcggaagag
ccataccttgtctggaaaagcgggctggtcgaaaaggccttgcgcgaccgtggcatcgag
accgaagtttccgggacggtagctgcgaccatgggggggcgccgccgggctgtactgacg
gccacccgcgccggacgccacaccttgctcggttaccatgaaaaggccagccacaggctg
gtcgatatcgccgaatgcccggtgctggacccggtcatcgttgaagcgctgcccggcctc
aagtcccttgcctcggaagtgctgccgaaaaagggtgaactgcggatgaccgtcctggta
acgaccaccggtctggatgtggctctcgacaaggccgacaaaggatacgagcgcaagatc
ccggccctgtcgcaaaaggtcgtcgatcagaaccttgcccggctctcggtcaacggcgaa
gtcattctggagctccgcccaccgctgctcgacatgggcggcatcggtattgttgccgcg
cccggcgggtttgcccaggcgacgctggcagcggaacatgcgctttccaagctggtaatt
gacggtgtcggcaaggccaagacaattgcagatctcttctccggcgtcggcacattcgcg
ctcaggctcggccgacaggcaaatgtgcatgcggtcgaaggcgatgctgcggcactggcc
gcctttgacaaggccctgcgcaaaccccaaggcctgaagaaggtaacctttgaacggcga
gacctgtcacgcaggccgctggtgaaggaagagctggagccttacgacgccgtggttttc
gacccgccgcgcgcaggcgctcaagcccaggcagagcaactggcgctatccaaggtcaag
acgattgttgccgtctcctgcaatccggcgacgcttgcccgggatctgcgcatcctgctc
gacggcggctacgtgctgcaaagcgtcacaccagtggaccagttccactattcgccccat
attgaagcagtggcggtgttgaccagaccttga

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