KEGG   Lactobacillus acidophilus NCFM: LBA0688
Entry
LBA0688           CDS       T00231                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC (subunit B)
  KO
K03702  excinuclease ABC subunit B
Organism
lac  Lactobacillus acidophilus NCFM
Pathway
lac03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LBA0688 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lac03400]
    LBA0688 (uvrB)
DNA repair and recombination proteins [BR:lac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LBA0688 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LBA0688 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_22 DUF87 AAA_30 SLFN-g3_helicase PepSY AAA_5 Kinesin AAA_7 T2SSE DUF1844
Other DBs
NCBI-ProteinID: AAV42563
UniProt: Q5FL61
Position
678879..680930
AA seq 683 aa
MIKRQKDRKFELVSKFKPAGDQQQAINKLTAGFEKGYKEQILEGATGTGKTFTMANIIAK
LNKPTLVITHNKTLVGQLYGEFKGFFPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSAI
NDEIDQLRHATTSALMERNDVIVVASVSCIYGLGDPKEYARSVLMIHEGQEYERNTLLRD
LVNLQYDRNDIDFQRGRFRVRGDVVEIFPAGNSNHAYRVEFFGDEIDRIVEIDSLTGEVI
GERESISLFPATHFMTNDEQLRRALKAISKEMKVQVKKFEGEGKLLEAERIKQRTTYDME
MMGEVGYTNGIENYSRHMEGRKVGEPPYTLLDFFPDDFLILIDESHATMPEIRAMYNGDR
NRKKTLIDYGFRLPSALDNRPLKLAEFEKHVNQILYVSATPGDYELERTDHKVEQIIRPT
GLLDPKIEVRPIEGQIDDLVGEINKRIDRNERVFVTTLTKKMAEDLTDYLKDLGIKVRYL
HSDIKTLERMQILRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRAYRPLV
QTMGRAARNANGEVIMYADTITDSMKAAIEATQRRRKLQEEFNKEHGIVPKTIIKPVHDV
ISITKPSEDSKKEKTDSFADLNFDELTAKQKKTMIKNLQEQMKEAAKKLDFEEAANLRDA
IMELQSSSRRPKTRKGKALNGKR
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgataaaacgacaaaaagatcgtaagtttgaattagtatcaaaatttaagccggcaggg
gaccagcagcaagctatcaataagttgacagcgggttttgaaaagggatataaggaacaa
attttagagggtgccactggtactgggaagacttttaccatggctaacattattgctaag
cttaacaagccaactttggtcattacacataataaaacattggttggtcagctttatggc
gaatttaagggatttttccctaataatgcggttgaatattttgtctcatactatgattac
tatcaaccagaagcgtatgttccacaatccgatacatacattgaaaaagattctgcaatt
aatgatgaaattgatcaattgcggcatgctactacttcagctttaatggagagaaatgat
gtaatagttgttgcttcggtttcatgtatttatgggttgggtgatcctaaagaatatgct
cgtagtgtattaatgattcatgaaggacaagaatatgaacgtaatacgttattacgtgat
ttagtaaacttgcaatatgatcgaaatgatattgattttcaacgaggacgttttcgggtc
cgtggtgacgttgtagaaattttcccagcaggaaattctaaccatgcctatcgtgttgaa
tttttcggtgatgaaattgaccgaattgttgagatcgattctttaactggggaagtaatt
ggtgagcgtgagagtatatcgctgtttccggctacgcacttcatgactaatgatgaacaa
ttaagacgagctcttaaggcgatttctaaagaaatgaaagtgcaagttaaaaagttcgaa
ggcgaaggtaaattgcttgaagccgaaagaattaaacaaagaactacctatgatatggaa
atgatgggagaagttggttataccaacggaattgaaaattactcaaggcatatggaaggt
agaaaagtaggagagccaccatatactttgcttgatttcttcccagatgattttttgatt
ttaattgatgaatctcatgcaaccatgccagaaattagagcgatgtacaatggagatcgt
aatcgtaaaaagaccttaattgattatggctttcgtttaccatcggcacttgataaccgt
ccactaaagttggcagaatttgaaaaacatgttaaccaaattttatacgtttctgctact
cctggagattatgaacttgagaggacagatcacaaggtagagcagattattcgtccaacg
ggattattggatcctaagattgaagtaaggccaatcgaaggacaaattgatgatttagtc
ggagaaataaataagcggatagatcgtaatgaacgtgtttttgttactactttaactaaa
aagatggccgaagatctgacagattatttaaaagatctgggtattaaagttcgttattta
cattcagatattaaaacgcttgaaagaatgcagatcttacgtgatttacgtttgggtaaa
tttgatgtactgattgggattaacttacttcgtgaaggtattgacgtgcctgaggtatcg
ctagtggcgattttagatgcagataaagaaggttttcttagagcataccggccattagtt
caaacaatggggcgtgcagcacgtaatgcaaatggagaagtaattatgtatgctgatacg
attaccgattcgatgaaagcagctatcgaggcaacccagagaagacgcaagttacaggaa
gaatttaataaagaacacgggattgttcctaagacgattattaaacctgttcatgatgtt
atttcaattactaagccatctgaagactctaagaaagaaaaaacagatagttttgcagat
ttgaattttgatgaattaacagctaaacaaaagaagacgatgattaagaatttgcaagaa
cagatgaaagaggccgctaagaaacttgactttgaagaagcagcaaacttgcgggatgca
ataatggaattgcagtcatcatctagaagaccaaaaacaagaaaagggaaggcattaaat
ggtaaacgataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (16)   
   Pfam (16)   
All databases (25)   

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