KEGG   Lachnoclostridium sp. YL32: A4V08_21145
Entry
A4V08_21145       CDS       T04430                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
lacy  Lachnoclostridium sp. YL32
Pathway
lacy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lacy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A4V08_21145
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lacy03021]
    A4V08_21145
   03019 Messenger RNA biogenesis [BR:lacy03019]
    A4V08_21145
Transcription machinery [BR:lacy03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     A4V08_21145
Messenger RNA biogenesis [BR:lacy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     A4V08_21145
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA AAA_14 NACHT AAA_25 AAA AAA_22
Other DBs
NCBI-ProteinID: ANU47933
Position
4480399..4482024
AA seq 541 aa
MREKLQTLPLSELKEMAKSRGIKGISSLRKAEIIDLLCAEAEKNPEVKPAEIKREEKAET
PRSQEAYRPQDQSHAPERNQSRSQDYQENRNDSRGTDNRRPVSRGYDNKYTQNRTQSPKP
HGNSGMNNSMSQNSTPSQSEGERFTRADNRSDSIGLSSQDMAELDSGIEANGILEVMPDG
FGFIRCENFLPGENDVYVAPSQIRRFNLKTGDIIVGNRRVKSATEKFAALLYIKTVNGYP
LSATETRPNFEDLTPIFPNRRLHMETPGERNTVAMRVLDLLAPIGKGQRGMIVSPPKAGK
TTLLKQVAKAVTTNNPDMHLMILLIDERPEEVTDIKEAIVGPNVEVIYSTFDELPDRHKR
VSEMVIERAKRLVEHGRDVIILLDSITRLARAYNLTVAPSGRTLSGGLDPAALHMPKRFF
GAARNMREGGSLTVLATALVETGSRMDDVVYEEFKGTGNMELVLDRKLSEKRIFPAIDIL
KSGTRRDDLLLSREEAEAVDIIRKATNSLKPEDAVEKVLDLFARTRNNREFVENAKRIRF
F
NT seq 1626 nt   +upstreamnt  +downstreamnt
atgcgtgaaaaactgcagaccctgcctctttcagaactaaaggaaatggccaagagccgt
ggaattaagggcattagttcattgagaaaggcagaaatcattgatttgctctgcgctgag
gcggagaaaaacccggaagtgaagccggcggagataaaaagagaagaaaaggctgaaacg
ccccgcagccaggaagcgtaccgtccccaggaccagtcccatgcccctgagcgcaaccag
tcaaggagccaggattatcaggaaaacaggaatgacagcagaggaacggataaccgccgc
cctgtttcaagagggtacgacaacaaatatacacagaacagaacccagtctcccaagccc
catggaaacagtggcatgaataacagcatgagccagaacagcacgccttcccagagtgag
ggtgagcgttttaccagagcggacaacaggagtgactcaatcggtttatccagccaggac
atggctgagttggacagcggcattgaggcaaacggcatactggaagtcatgccggacgga
tttggattcatccgctgtgaaaatttccttccaggtgaaaacgacgtctatgtggctcca
tcccaaattcgccgtttcaatctgaagacaggcgatattatagtgggaaaccgcagggtg
aagtctgcaacggagaagttcgcggccctgctctacatcaagacggtaaacggctatccg
ttaagcgccacggagacaaggcccaattttgaggacctgacccccatctttcccaacagg
cgccttcacatggaaacacctggagagaggaatacagtggccatgcgtgtcctggacctt
ctggctcccatcggcaagggacagcgcggtatgatcgtgtctcctccaaaggcaggtaag
acaacactgctaaagcaggtggcaaaggcagtcacaaccaataatccggacatgcatctg
atgatccttctgatcgacgagcgccctgaggaggttacagacataaaagaagccattgtg
ggccccaatgtggaagtcatttactctacctttgacgagctgcctgaccgtcataagagg
gtatccgagatggtgatcgagcgggcaaagcgtctggtggagcacggacgtgatgttatt
atcctgctggacagcattaccaggctggcaagagcatacaacctgacggttgcacccagc
ggccgtacattatccggcggtctggatccggcggcccttcatatgccaaagcgtttcttc
ggcgcggccagaaatatgcgcgagggcggaagcctgaccgttctggccactgcgctggtg
gagacgggaagccgcatggatgatgttgtgtatgaggaatttaagggcaccggcaatatg
gagctggtgcttgacaggaaactgtctgagaaacgtattttcccggccatcgatatattg
aagtccggtaccagacgggatgatctcctgctttcccgggaggaagcggaggcagtggat
atcatccgcaaggccactaattccctgaaacctgaggacgcagtggaaaaggtacttgac
cttttcgcgaggaccaggaataacagggaatttgtggagaatgccaagcggattcggttc
ttctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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