KEGG   Lingula anatina: 106169811
Entry
106169811         CDS       T04921                                 
Name
(RefSeq) eukaryotic initiation factor 4A-III
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
lak  Lingula anatina
Pathway
lak03013  Nucleocytoplasmic transport
lak03015  mRNA surveillance pathway
lak03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106169811
  09122 Translation
   03013 Nucleocytoplasmic transport
    106169811
   03015 mRNA surveillance pathway
    106169811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lak03019]
    106169811
   03041 Spliceosome [BR:lak03041]
    106169811
   03009 Ribosome biogenesis [BR:lak03009]
    106169811
   03012 Translation factors [BR:lak03012]
    106169811
Enzymes [BR:lak01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     106169811
Messenger RNA biogenesis [BR:lak03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     106169811
   mRNA cycle factors
    Stress granule specific factors
     106169811
Spliceosome [BR:lak03041]
 Complex C
  Other components
   EJC/TREX
    106169811
Ribosome biogenesis [BR:lak03009]
 Eukaryotic type
  90S particles
   Helicases
    106169811
Translation factors [BR:lak03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    106169811
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 UTP25 AAA_30
Other DBs
NCBI-GeneID: 106169811
NCBI-ProteinID: XP_013404883
UniProt: A0A1S3J3P5
Position
Unknown
AA seq 401 aa
MAASSRRVLSDDLKNVEFETSEDVEVVPTFDSMGLREDLIRGIYAYGFEKPSAIQQRAIK
PVIKGRDIIGQAQSGTGKTATFSIGILQTLDTQVRETQALVLSPTRELAVQIQKVILALG
DYMSVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEAD
EMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEMTSKFMTDPIRIIVKRDELTLEG
IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD
MPQKERDAIMKEFRSGASRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR
FGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1206 nt   +upstreamnt  +downstreamnt
atggcggcatcatcccggcgtgttctttctgatgatttaaaaaatgtcgagtttgaaacg
agcgaagatgtcgaagtggtacctacgtttgattccatgggtctcagggaagatctcatc
agaggaatatatgcttacggttttgaaaaaccatctgcaattcagcagagagcaattaaa
cctgtcataaaaggaagagacatcataggccaggcccagtctggaacaggtaaaactgct
acattttccataggaattcttcaaacattggatacacaagtgagagaaacacaggctttg
gttctgtctccaaccagagaacttgctgtccagattcagaaggttattctggctttgggt
gattatatgagtgtacagtgtcatgcgtgtattggaggtacaaacattggtgaagatatc
cgcaagctagactatgggcagcatgttgtatctgggactcctgggagagtgtttgacatg
atcagaagaagaaatctccgaacacgctccatcaaaatgttggtattggatgaagctgat
gaaatgttgaacaaaggtttcaaggaacagatctatgatgtgtaccgctacctgccccct
gctacacaggtggtgttgttctcggccactctgcctcatgagatcttagagatgaccagc
aagtttatgactgaccccatccgcatcattgttaaacgtgatgagttgacattggaaggc
attaagcagttctttgtggcagtggagagagaagaatggaagtttgatacactctgtgat
ttgtatgacacactcactattacacaagcagttattttctgtaatactaagaggaaggtg
gactggttgactgagaaaatgagagaagctaactttacagtgtcctctatgcatggtgac
atgccccagaaggagagagatgccatcatgaaagagttcagatcaggagcaagtcgtgtg
ctgatcactactgatgtgtgggccagaggtattgatgtgcagcaagtgtccctggttatt
aactatgacctaccaaacaaccgtgagttgtacatccacaggattggtcgatcaggcaga
tttggtagaaagggtgtggccatcaactttgtcaaaaatgatgacattcgaatccttcgt
gatattgaacagtactattccacccagattgatgaaatgccgatgaatgtggctgatttg
atctaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (304)   
   KEGG ORTHOLOGY (1)   
   RefGene (300)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (324)   

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