KEGG   Lactobacillus amylolyticus: B1745_05430
Entry
B1745_05430       CDS       T05057                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lamy  Lactobacillus amylolyticus
Pathway
lamy03030  DNA replication
lamy03410  Base excision repair
lamy03420  Nucleotide excision repair
lamy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lamy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B1745_05430
   03410 Base excision repair
    B1745_05430
   03420 Nucleotide excision repair
    B1745_05430
   03430 Mismatch repair
    B1745_05430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lamy03032]
    B1745_05430
   03400 DNA repair and recombination proteins [BR:lamy03400]
    B1745_05430
Enzymes [BR:lamy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B1745_05430
DNA replication proteins [BR:lamy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B1745_05430
DNA repair and recombination proteins [BR:lamy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B1745_05430
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B1745_05430
   MMR (mismatch excision repair)
    DNA ligase
     B1745_05430
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B1745_05430
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT zf-NADH-PPase RNA_pol_A_CTD BRCT_2
Other DBs
NCBI-ProteinID: ARD07093
UniProt: A0A1V0JDZ9
Position
complement(1074543..1076552)
AA seq 669 aa
MADITLDQAKTEVAALRKQLDEWAEAYYSKDAPEVEDNVYDQKYNRLLELEKDFPELVTP
DSITQRVGGKIDTKFTKVAHPIPMLSMGDVFSKEELREFDQRIQKQVGHPVAYNVELKID
GLSLSLEYQNGRLMRASTRGNGQVGEDVTANARFIRDIPQTLPKPLTIEVRGECYMSKEA
FAKLNAERDENGKEVFANPRNAAAGSLRQLDAKVTKKRDLSTFIYTWVNPPEGITSQHQA
IEEMHKLGFHTNQTGRKLETLDEIFDFIDEYTAKRDSLPYCIDGIVLKVDDLGIEQELGS
TVKVPRWEIAYKFPPEEQETVVRDIEWTVGRTGVVTPTAVMDPVQLAGTTVARAVLHNPD
LLKEKDVRIGDTVKLHKAGDIIPEISEVVLSKRPADSKPYEIPTTCPSCGQKLVHLKGEV
ALRCINPSCPAQLEEGIIHFASRQAMNIAGLGPKIVKQLIAKDLVHNVADLYHLTPDDLM
QLDHFKEKSINNLLTAIDKSKQNSVELLLTGLGIDHVGAKAARLISQKFKNLPKIMAADV
QEVAAIDTIGPTIAESLTTYFAQPAVQKLIEELEESGLNMDYLGQDETEAEIADNFFKNK
TVVLTGKLAHYTRSEFTKRLQSLGAKVTGSVSHKTDYVIYGKDAGSKFTKAQSLGVPTLT
EEEAIAQIK
NT seq 2010 nt   +upstreamnt  +downstreamnt
atggctgatataactcttgatcaagctaaaaccgaagttgcggctttgcgtaagcagctg
gacgaatgggctgaggcttactactcaaaagacgcgcctgaagttgaagacaacgtttac
gatcaaaaatacaatcgtctgcttgaactagaaaaagattttcctgaattggtaaccccg
gactcaattactcaaagagtcggcggaaaaattgacacgaaatttactaaagtagcacac
ccgattccaatgctttcaatgggtgatgttttttcaaaagaagagttaagagaatttgat
cagcgaattcaaaagcaagtaggtcatccggtagcttacaatgttgaattaaaaatcgat
ggcttgtcattgtcgcttgaatatcaaaatgggcgtttgatgcgggcatcaaccagagga
aatggtcaagtcggtgaggatgttaccgctaatgcgcgctttattcgcgatattcctcaa
actttgccaaagccgttaacaattgaagtgcgtggcgaatgctacatgagtaaagaagct
tttgccaaattaaatgcagagcgggatgaaaacggcaaagaagtttttgccaatccgcgg
aatgcagcggctggctcacttcggcaattagatgccaaagttacaaaaaagcgggattta
agcacctttatttatacttgggtaaatccgcctgagggcattactagtcagcatcaggcg
atcgaagaaatgcataaattgggttttcacaccaatcaaactggtcgcaagctagaaaca
ttagatgaaatctttgactttattgatgaatacacggccaagcgtgatagcctaccctat
tgtattgatgggatcgttcttaaggttgatgatcttggcattgagcaggaattaggcagc
accgttaaagttccacgttgggaaattgcttataagtttccacctgaagaacaagaaaca
gtagtgcgtgatatcgaatggaccgtgggccgcaccggtgtagtgacgccgacagcggtg
atggatccagttcaactagcgggaacaacggttgcgcgtgcggttttgcacaatcctgat
ttattaaaagaaaaagatgtcagaattggcgataccgttaagttgcacaaggctggtgac
attattcctgaaatttccgaagttgttttgtccaagcgcccggccgactctaagccgtat
gaaattccaacaacttgtccttcttgtgggcaaaaattggttcacttaaagggtgaagta
gccttgcggtgcataaatccatcttgtccagctcaattagaagagggtattatccacttt
gcgtcaagacaggcgatgaacattgccggtctaggacctaaaatcgtcaagcaactgatt
gccaaagatttggttcataatgttgctgacttgtatcatttgactccagatgatttaatg
cagctcgatcactttaaggaaaaatcgattaataatcttttgacagcgattgataagtca
aagcaaaattcagttgaattattgttgaccggattggggattgaccatgttggagcaaag
gctgctcgcttaatttcgcaaaagtttaaaaatcttcctaagattatggccgcagacgtg
caagaagttgcagcaatcgatacaataggaccgacgattgccgaaagtttaacaacctat
tttgctcagccagctgttcaaaaattaattgaagagcttgaagagagtggcctgaacatg
gattatctcggtcaagatgagacggaagccgaaatagccgacaatttctttaagaataaa
acggttgtattaacaggtaaattagcgcattatacacgaagtgaatttaccaagcggctg
caatctttaggagccaaagtaactggatctgtttctcataaaactgactatgtcatttat
ggcaaggatgctggttccaagtttaccaaagctcaaagtttaggcgtaccaaccttgacc
gaagaagaagcaattgcacaaattaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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