KEGG T04526: GLA29479

Lysobacter antibioticus ATCC 29479: GLA29479_4219

Entry

GLA29479_4219     CDS       T04526

Symbol

rsmD

Name

(GenBank) ribosomal RNA small subunit methyltransferase D

K08316

16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]

Organism

laq Lysobacter antibioticus ATCC 29479

Brite

KEGG Orthology (KO) [BR:laq00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:laq03009]
    GLA29479_4219 (rsmD)
Enzymes [BR:laq01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.171  16S rRNA (guanine966-N2)-methyltransferase
     GLA29479_4219 (rsmD)
Ribosome biogenesis [BR:laq03009]
Prokaryotic type
  rRNA modification factors
   16S rRNA modification factors
    GLA29479_4219 (rsmD)

SSDB

Motif

Pfam:

Cons_hypoth95 RrnaAD MTS Methyltransf_25 Methyltransf_31 MethyltransfD12 Methyltransf_24 PrmA

Other DBs

NCBI-ProteinID:

ALN65060

Position

complement(4584838..4585464)

AA seq 208 aa
MKTPHRGPRPVSAASRSTAPTGKVRIIGGRWRGTRLAVADAPGLRPTSDRVRETLFNWLM
PVLPGARVLDLFAGSGALGLEALSRGAASAVLVERDPALAAELRALTARLQGGEAATVAQ
ADALAWLAAQPKAGEGASGFDLAFVDPPFAAGLWNTVWPALLPALAPSAWLYVESPADAA
IDLPGDWLLHREGATREVRYAVYRRLAP

NT seq 627 nt +upstreamnt +downstreamnt
atgaagactccacaccgcggtccgcgtcccgtttcggcggcttcgcgcagcaccgccccg
accggcaaggtccgcatcatcggcgggcgttggcgcggcacccgcctggccgtggccgat
gcgccgggcctgcgcccgacctccgaccgggtgcgcgagaccttgttcaactggctgatg
ccggtgctgccgggtgcgcgtgtgctcgacctgttcgccggcagcggcgcgctcggcctg
gaagcgctgtcgcgcggcgccgcttcggcggtgctggtcgaacgcgaccccgcgctggcc
gccgagttgcgcgcgctgaccgcccgcctgcaaggcggcgaggccgccaccgtggcccag
gccgatgccttggcctggctcgcggcgcagccgaaggcgggcgagggtgcatcgggcttc
gatctggccttcgtcgacccgccgttcgcggcgggtttgtggaacaccgtctggccggcc
ttgttgccggccttggcgccttcggcctggctgtacgtcgaatcgccggccgacgcggcg
atcgacctgcccggcgactggctgctgcatcgcgaaggcgccacccgcgaggtccgttac
gccgtgtaccgccgcctggcgccctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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