KEGG T06085: R2C4

Leisingera aquaemixtae: R2C4_04395

Entry

R2C4_04395        CDS       T06085

Symbol

topA

Name

(GenBank) type I DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

laqu Leisingera aquaemixtae

Brite

KEGG Orthology (KO) [BR:laqu00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:laqu03032]
    R2C4_04395 (topA)
   03400 DNA repair and recombination proteins [BR:laqu03400]
    R2C4_04395 (topA)
Enzymes [BR:laqu01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     R2C4_04395 (topA)
DNA replication proteins [BR:laqu03032]
Prokaryotic type
  DNA Topoisomerases
   R2C4_04395 (topA)
DNA repair and recombination proteins [BR:laqu03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      R2C4_04395 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom

Other DBs

NCBI-ProteinID:

QDI75031

Position

complement(554580..557222)

AA seq 880 aa
MPVVVVESPAKAKTINKYLGPDYTVLASYGHVRDLPAKDGSVDPDADFGMTWEVANDSRK
HVKAIADALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAITKEA
VTEAMRNPREVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVE
REMEIEAFNPQEYWSVRAQLATPRGQEFEARLTVMGGEKLDKYSLKNSTAAELAVQAVAS
RKLKVLSVEAKPAARNPSAPFMTSTLQQEASRKFGMGARQTMNAAQRLYEAGYITYMRTD
GIDMAPEAVQAARAEIEKRYGAEYVPSSPRIYKNKAKNAQEAHECIRPTDMGRDAKALKV
TDDDQRKLYDLIWKRTLSCQMEGARLERTTVDIGSDDQQVVLRATGQVVLFDGFMRVYEE
GRDDVADEDDKRLPQIMEGEALKFASSLAAQAEKAGKEASVLSDNGAVLALQHHTQPPPR
YTEATLVKRMEELGIGRPSTYASVITTIQDREYVRKDKNRLFPEDKGRIVTIFLLNFFRK
YVGYEFTANLEEELDDVSAGERDYKDLLGRFWRDFSAAIAETSELRITEVLDVLDAALAP
QLYPPREDGTDPRTCPKCGQGQLHLKTSRTGGFVGCGNYPECNYTRPISGEGAEGYERVL
GEDDGDEIHLKSGRFGPYVQRGEATPENKKPPRSSLPKQGKDFLPGWGPNEITLEQALTL
LTLPRDIGQHPDGGAIQSNLGRFGPYIAHQLPDEEKPVYVNLKETLDVFEIGMNRAVEML
AEKRANPGRRGSRAAAKPLKELGEHPEGGGAVNIMDGRYGPYVKWEKVNATLPKDVEPKD
VTMEMAVELIAEKSSKGGKKKAAAKKPAAKKKAAPKKAAS

NT seq 2643 nt +upstreamnt +downstreamnt
atgccagtcgttgttgtcgaatccccggccaaagcaaaaacaatcaataagtatcttggc
cccgactatacggttctggcgtcttacggccacgtgcgcgacctgccggccaaagacgga
tccgtcgacccggatgcggatttcggcatgacctgggaggtcgccaacgattcccgcaaa
cacgttaaggccatcgccgacgcgctgaaggacgacaatgcgctgattctcgccaccgac
cccgaccgcgagggcgaggcgatcagctggcatttgcaggaagcgctgaccaaacggcgg
tcgatcaagaaggacaccgccgtcagccgcgtcaccttcaacgcgatcaccaaggaagcg
gtaaccgaggcgatgcggaacccgcgcgaggtcgacatgccgctggtcgaggcctatctg
gcccgccgggcgctggattacctcgtgggcttcaacctgtcgccggtcctgtggcgcaag
ctgccgggcgcgcgctctgccggccgggtgcaatcggtctgcctgcgcctgatcgtagag
cgcgagatggagatcgaggccttcaacccgcaggaatactggtcggtgcgcgcccagctg
gccaccccgcgcggccaggagttcgaggcgcgcctgaccgtcatgggcggcgaaaagctc
gacaagtacagcctgaaaaactccaccgcagcagagctggcagtgcaggccgtggcctcg
cgcaagctcaaggtgctgtcggtcgaggccaagccggcggcccgcaacccctctgccccc
ttcatgacctccaccctccagcaggaggccagccgcaaattcggcatgggcgcacgccag
accatgaacgcggcgcagcggctttatgaggcgggctacatcacctatatgcggaccgac
ggcatcgacatggcgccggaagccgtgcaggccgcccgcgccgagatcgaaaagcgctat
ggcgccgagtatgttccctcctcgccgcggatctacaagaacaaggccaagaacgcccag
gaggcgcacgagtgcatccgcccgaccgatatgggccgcgatgccaaggcgctgaaggtg
accgacgacgaccagcgcaagctctatgacctgatctggaagcggacgctgtcgtgccag
atggaaggcgcccggctggaacgcaccaccgtcgacatcggctcggacgatcagcaggtt
gtgctgcgcgccaccggccaggtggtgctgtttgacggcttcatgcgggtttacgaggaa
ggccgcgacgatgtcgcggatgaggacgacaagcgcctgccgcagatcatggaaggcgaa
gcgctgaaattcgcctcctcgctggcggcacaggccgaaaaggccggcaaggaggcttcg
gtcctgtcggacaacggcgccgtgctggcgctgcagcaccacacccagccgccgccgcgc
tataccgaggcgacgctggtcaagcgcatggaagagctcggcatcggccgcccctcgacc
tacgcctctgtcatcaccacgatccaggaccgcgaatacgtccgcaaggacaagaaccgc
ctgttcccggaggacaagggccggatcgtcaccatcttcctgctgaacttcttccgcaaa
tacgtgggctatgagttcaccgccaatctggaggaagaactcgacgacgtgagtgcgggt
gaacgcgactacaaggacctcctgggccgattctggcgtgatttctcggcggcgatcgct
gaaacttccgaactgcgcatcaccgaggtgctggacgtgctggacgcagcacttgcgccg
cagctttacccgccgcgcgaggatggcaccgatccgcgcacctgcccgaaatgcggccag
ggccagctgcacctgaagacctcgcgcaccggcggctttgtcggctgcggcaactatccc
gaatgcaactacacccgcccgatttccggcgaaggcgccgaagggtatgaacgcgtcctg
ggcgaggatgacggcgacgaaatccacctgaaatccggccgcttcgggccctatgttcag
cgcggcgaagccacgcccgagaacaagaagccgccgcgctcctcgctgcccaagcagggc
aaggacttcctgcccggctgggggccgaatgagatcactcttgagcaggctctgaccctg
ctcaccctgccgcgcgacatcggccagcacccggacggcggtgccatccagtccaacctg
ggccggttcgggccctatatcgcgcatcagctgcccgatgaggaaaagccggtgtatgtg
aacctcaaggagacgctggacgtctttgagatcggcatgaaccgcgcggtggagatgctg
gccgagaagcgtgcaaacccgggccgccgcggcagccgggcggccgccaagccgctgaag
gagctgggcgagcaccccgaaggcggcggcgcggtcaacatcatggacgggcggtacggg
ccttatgtcaaatgggagaaggtgaatgccaccctgcccaaggacgttgagcccaaggac
gtgaccatggaaatggcggtggagctgatcgccgagaaatcgtccaagggcggcaagaag
aaagccgcggcgaaaaagcccgctgccaagaagaaggccgccccgaaaaaggccgcgtcc
taa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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