KEGG   Candidatus Liberibacter asiaticus psy62: CLIBASIA_05395Help
Entry
CLIBASIA_05395    CDS       T00948                                 

Gene name
ligA
Definition
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
las  Candidatus Liberibacter asiaticus psy62
Pathway
las03030  DNA replication
las03410  Base excision repair
las03420  Nucleotide excision repair
las03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:las00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CLIBASIA_05395 (ligA)
   03410 Base excision repair
    CLIBASIA_05395 (ligA)
   03420 Nucleotide excision repair
    CLIBASIA_05395 (ligA)
   03430 Mismatch repair
    CLIBASIA_05395 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:las03032]
    CLIBASIA_05395 (ligA)
   03400 DNA repair and recombination proteins [BR:las03400]
    CLIBASIA_05395 (ligA)
Enzymes [BR:las01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CLIBASIA_05395 (ligA)
DNA replication proteins [BR:las03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CLIBASIA_05395 (ligA)
DNA repair and recombination proteins [BR:las03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CLIBASIA_05395 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CLIBASIA_05395 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CLIBASIA_05395 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CLIBASIA_05395 (ligA)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HALZ
Motif
Other DBs
NCBI-ProteinID: ACT57645
UniProt: C6XGZ2
Position
complement(1169109..1171304)
Genome map
AA seq 731 aa AA seqDB search
MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH
AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK
KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN
IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV
HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID
GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP
VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE
RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA
FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD
SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR
VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK
IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ
YNTTLRIHDDD
NT seq 2196 nt NT seq  +upstreamnt  +downstreamnt
atgaaaaaacgtcaattgattccaatcgaggcattgagtatcgaacaagctagaaaagaa
ttatcgtctcttgaacaagagatatcatatcatgatgattgttattatcagtattcaaaa
cctataatcttagattctgaatatgacgcattaaaaagacgttgtgatgctattgcacat
gcttttcctgatttagcacgctctgaggatcctaatgggcctctgaataaaataggggga
gaaatgaacctctccttatttaaagtgactcattctatcccaacattatcattagaaaag
atttggaatatcgaagatcttcgtaagttcatcactagaatttatcgtttttggcaaaaa
aaagatgataacagcattttttttactctggagcctaaaattgatgggacaatgattact
atacgatatgaaaaaggaaagtttgtttatgctgctttgcgtggtgacggtcatagcgga
gaggatgttagtgcttgtattcgtgctattccgacaattcctcgtgttttatcattgaat
attccagaaattatagaagtgcgtggtgaagtttacatctcaaaaaatgattttcttgcg
cttaatgatgaaatgattgcagtcggccgaaaaccctatgctaatcctagaaacgctgct
tctggcatattacgtcgtttaaatcctacggatattactcggtatttgaatttttttgtg
catggattaggaaaaacatctgagatattcgcaaaaggtcagtatgaaatgctacaaaaa
atgcgttgtctaggctttcctgttaataacggagttcgacaagcgaatacttttcacggt
atcgtatcctattataatgaaatgaaatcaatacgttctactcttccatatgatatagat
ggattggtatataaggtcgatgaattttctttacaaaaacaattaggagaacgagctcga
agcccacgttggatgatatcgcataaatttgcagagaaacaagcatctacgcgtctttta
gatattgatattcaaattggtcgtactggtattctcacgccggtagctcgtcttgaacct
gttaacataggaggtgctttaatcactaatgcaacattgcataatgaagattacatcaaa
ggattggatgcatctggtaaagtaatgcgtggaggaagggatattcgtgtaggggatagg
gtcttggtcaaaagagccggagaggtgattcctaaagttgtggatattattgtcaatgaa
agacatcctgatgctcaaccgttttcttttccttctttttgtcctatctgtcagagtcga
gtagtgcgtgatttaaatccgaaaacaggaaaacttgttgctgcccatcgttgtacggga
ggacttgcgtgctcggcacagcaattagaacgtcttaagcattttgtctcgcgagatgct
ttcaatatagaaggtttaggaaaacaacaattggatttcttctttaaatcagaagatcct
gctttttctattaggattcctgccgatatttttacattgcaacgtcgtcaacaaacttct
actacaaagattgagaatattctaggttttggcgatgttagtgtcaccaatctttacgat
tctattaataaaagacgcaatatttctttggaaagatttatattttccttaggtattcgg
catgttggcgcagaaattgccagatctttggcgaaatattatctctcatatcaaaatttt
gcacaagaaatcaacaacattattgcacataacaatgatgattggctgtctttaataaga
gttcctctagtaggagatataatagcgcaggctattgtagaattttatcagaatcctagg
aatatttgtgctgtagaagcactgttaaaagaagtatctccttctattgggcgtcacgaa
aaaaatgtcagctctgagatcgaaaataagaaattagtatttaccggaaccctgcagaaa
attcaacgccataaagcacaagaatatgtgactcagttaggtgctgttgtttctgctatt
ctttctcgtaaaactgatattattattgttggtgataatcctggttccaagttagagaag
gcacaacaactaggtgttaaaataatgaacgaagagcaatttttatttctattacaacag
tataatacaacgttgcgtatccacgacgatgactaa

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