KEGG   Loxodonta africana (African savanna elephant): 100655410
Entry
100655410         CDS       T04351                                 
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X2
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100655410 (CNOT6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lav03019]
    100655410 (CNOT6)
Enzymes [BR:lav01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     100655410 (CNOT6)
Messenger RNA biogenesis [BR:lav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100655410 (CNOT6)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100655410 (CNOT6)
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 type_II_gspD_N0 LRR_6
Other DBs
NCBI-GeneID: 100655410
NCBI-ProteinID: XP_010591610
Position
Unknown
AA seq 552 aa
MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTLDILNLYQEPDGTRRLLNYLLDNLAVSTEQPPPRSWIMLQEPDRTRP
TALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEIVSCNADIISLQEVETEQ
YYSFFLVELKERGYSGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQL
AMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANAHMHWD
PEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGEFGTIPLVLCADLNSLPDSGVVEYL
STGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYTNYTFD
FKGIIDYIFYSKPQLNTLGILGPLDHHWLLENNISGCPHPLIPSDHFSLFAQLELLLPFL
PQVNGIHLPGRR
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgcccaaagaaaaatacgagccccctgaccctcggaggatgtacacgattatgtcctct
gaggaggcagcaaatggaaagaaatcacattgggcagagcttgaaataagtgggaaagta
agaagcttaagctcatctttgtggtcactaactcacttgacagctttgcatctgagtgac
aattccctgtcccgcattccttcagacattgccaagcttcacaatctggtgtatctggac
ctatcctctaataaaattcgtagtttaccagcagaactcggaaacatggtatcactcagg
gaactccatttaaataacaacctgttacgagttctaccttttgagctgggaaaactgttt
cagttgcagactttaggcctgaaaggaaatccacttaccctggatatattgaacctctat
caggaaccagatggcacaagaaggctactgaactatttgcttgataatttggcagtttca
acagaacagccacctccaagatcttggattatgttacaagaaccagacagaacaaggcca
actgccttgttttctgtcatgtgctataatgttctttgtgataaatatgcaacccggcag
ttatacggctactgtccatcatgggcactaaattgggactacaggaaaaaggccattatt
caagaaatcgtgagctgcaatgctgatatcataagtcttcaggaggttgaaacggaacag
tattacagtttttttctggtagaactgaaagaacgtggctatagtggattctttagtcct
aagtctagagctcgaacaatgtcagaacaagaaagaaaacatgttgatggctgtgcaata
ttcttcaagacagaaaaatttactttggttcagaaacacactgttgaatttaatcagcta
gcaatggcaaattcagaagggtctgaagctatgctgaacagagtcatgacaaaagataac
attggagttgcagtactgctagaacttcgaaaggaattgattgaaatgtcatccggaaag
ccacatcttggaacagaaaaacaacttattcttgtggctaacgctcatatgcattgggac
cctgaatattctgatgtgaagctggtacaaactatgatgttcctctcagaagtaaagaac
attattgataaagcctctcgaagtctcaaatccagtgtattgggagaatttggaactatt
ccacttgtcttatgtgcagatcttaattctttgccagactctggtgttgtggaatatttg
agcactggtggagtagaaacaaatcataaagactttaaggaactgagatataatgaaagt
cttacaaacttcagctgtaacgggaagaatggaacaaccaatggaaggatcactcatggt
tttaaattaaagagtgcctacgagaatggcctgatgccttacacaaattatacatttgat
ttcaagggtataattgactacatcttctattctaaacctcaactgaacactttaggcatc
ctgggacctctggaccaccattggctacttgagaacaacatcagcggctgtccacaccca
ctcatcccttctgaccatttctcactttttgcacaactggagcttttactgcctttccta
ccccaagtcaatggcattcaccttcctggcaggaggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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