KEGG   Loxodonta africana (African savanna elephant): 100676265
Entry
100676265         CDS       T04351                                 
Symbol
RB1CC1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
  KO
K17589  RB1-inducible coiled-coil protein 1
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav04140  Autophagy - animal
lav04211  Longevity regulating pathway
lav05010  Alzheimer disease
lav05014  Amyotrophic lateral sclerosis
lav05016  Huntington disease
lav05017  Spinocerebellar ataxia
lav05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:lav00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100676265 (RB1CC1)
 09150 Organismal Systems
  09149 Aging
   04211 Longevity regulating pathway
    100676265 (RB1CC1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    100676265 (RB1CC1)
   05014 Amyotrophic lateral sclerosis
    100676265 (RB1CC1)
   05016 Huntington disease
    100676265 (RB1CC1)
   05017 Spinocerebellar ataxia
    100676265 (RB1CC1)
   05022 Pathways of neurodegeneration - multiple diseases
    100676265 (RB1CC1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lav01009]
    100676265 (RB1CC1)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lav04131]
    100676265 (RB1CC1)
   03029 Mitochondrial biogenesis [BR:lav03029]
    100676265 (RB1CC1)
Protein phosphatases and associated proteins [BR:lav01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100676265 (RB1CC1)
Membrane trafficking [BR:lav04131]
 Autophagy
  Autophagosome formation proteins
   ULK complex
    100676265 (RB1CC1)
Mitochondrial biogenesis [BR:lav03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-independent mechanism factors
    100676265 (RB1CC1)
SSDB
Motif
Pfam: ATG11 ATG17_like TBK1_ULD ubiquitin UL42
Other DBs
NCBI-GeneID: 100676265
NCBI-ProteinID: XP_010597845
Position
Unknown
AA seq 1588 aa
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCDRPPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLPEHEGSEKAEMKRSTEP
VLSSETPRTTNRSSLTSFPKSVEDVMPDAADGEGGKEVRESCHTAVQRDGTSVGAKDDDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFLAECRQTIAKLDNQNMKA
IKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKREFFGKL
FRKSFLRNRLFRGLDSWPSSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLSEQKTSASQASPQSASSPRTESATG
IAPTTSPSTPPPLTVQGPFCPAVCPLEELSPDSIDAHTFDFETIPHPNTEQTLDQGSLDL
DSLAESPESDFMSAVNEFVIEENSSSPNPVSDPQSPEMMVESLYSSVINAIDSRRMQDTN
VCGKEDSGGHASNVQLEKCRVVAQDSHFSIQTIKEDLCHFRALVQKEQCDFSNSLRGTAV
EIRNIIEKVRCSLEVTLQEKHQRELQTLKNEYEAKLDALIKESEENENKIKKLKGDLVCL
EEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMENIMHTQSCEIKELKESREIALGDL
KKLHVENDEKMQLLRAELQYLEQSHLKELEDTLQVRHTQEFEKVMTEHRVSLEKLKEENQ
HRIDQIQESHATIVQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKLLLEESK
AQQKETLKSLLEQETEGLRTEISKLNQKIQDNNDNHQVGLAELRTLMTIEKDQCISELIS
RHEEESNMLKAELNEVTSLHHQAFEIEKKLKDQIVELQNKVESELSTLEKQNDKKMIQQE
ERYEAIIHKLEKDKEKLIVSQDHDREQLIQKLNSEKEEAIKAALNEFKLGRDAAEKELLE
KVQYLETQLAKSPAREESSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIA
EQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLE
EEVSKLRSSSLLPSPHVAAAPERFGACAPELPGETERSAVETTDEGRLDSAMETSMMSVQ
ENIHMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDFQVGDL
VLIILDERHDNYVLFTVSPTLYFLHSESLPGLDLKPGEGASGASRRPWVLGKVMEKEYCQ
AKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq 4767 nt   +upstreamnt  +downstreamnt
atgaagttgtatgtatttctggtcaatactggaactaccctaacatttgacactgagctt
acagtgcaaactgtggcagaccttaaacatgccattcaaagtaaatacaagattgctatt
cagcaccaggtgctcgtggtcaatggaggagaatgcatggctgcagatcgaagagtgtgc
acgtacagcgctgggacggacacaaatccaatttttctttttaataaagaaatgatctta
tgtgatcgtcccccggctattcctaaaactaccttttcaactgaaaatgacatggaaata
aaagttgaagagtctcttatgatgcctgcagtttttcacactgtagcttcaaggacacaa
cttgcagtggagatgtatgaagttgccaagaaactttgctctttttgtgaaggtctggtt
catgacgaacatcttcaacatcaaggctgggctgctatcatggccaatttggaggactgt
tcaaattcataccaaaagctccttttcaagtttgaaagtatttattcaaattatctgcag
tccatagaagacatcaagttaaaacttactcatttaggaacagcggtttcagtaatggcc
aagattccactgttggagtgcctaaccagacatagttacagggaatgtctgggaagacta
gattctttacctgaacacgaaggctcagaaaaggctgagatgaaaagatccactgaaccg
gtgctctcctctgagacgcctagaacaactaacagatcgtcattaacctcatttcccaag
tcagtggaagatgtcatgccagatgctgcagatggcgaaggtggcaaagaagttagggaa
tcctgtcacactgctgtccagcgtgacggaacttcagtgggtgctaaagatgacgatctg
ccttttttcaatgtttctttattagactggataaatgttcaagatagacctaatgatgtg
gaatctttggtcaggaagtgctttgattccatgagcagacttgacccaaggattattcga
ccatttctagcagagtgccgtcaaactattgccaaacttgataatcagaatatgaaagcc
attaaaggccttgaagataggctttatgccctggaccagatgattgctagctgcagcaga
ctggtgaatgaacaaaaagaacttgctcagggatttttagctaatcagatgagagcagaa
aacttgaaggatgcatctgtattgcctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcaaaaccatagaaaactattggatattaaacagaagtgtaccactgccaaa
caagaactagcaaataacctgcatgtcagattgaagtggtgttgctttgtaatgctacat
gctgatcaagatggagagaaattgcaagctttgcttcgccttgtaatagagctattagaa
agagtcaagattgttgaagctcttagtacagttcctcagatgtactgcttagctgttgtt
gaggttgttagaagaaaaatgttcataaaacactacagggagtgggctggtgctttagtc
aaagatggaaagcaattatatgaagctgaaaaatcaaaaagggaattctttgggaaatta
ttcaggaagtctttcttaagaaatcgtctgtttaggggactggactcctggccctcttcc
ttttgtactcaaaagccacgaaagtttgactgtgaacttccagatatttcattaaaagat
ttacagtttctgcaatcattttgtccttcagaagttcagccattcctcagggttccctta
ctttgtgacttcgaacctctacaccagcatgttcttgctctacataatttggtaaaagca
gcacaaagtttggatgaaatgtcacagaccattacagatcttctgagtgaacaaaagacc
tctgcaagtcaggcatccccacagtctgcttcctcaccaaggacagaaagtgcgacagga
atagcacctactacctcaccgagcacgcctcctcccctcactgttcagggccccttctgc
cctgcagtgtgtcctttagaagaattatctccggacagcattgacgcacacacgtttgat
tttgaaactatcccccatccaaacacagagcaaactcttgaccaaggttccttagacttg
gattcattagcggaaagtcctgaatcagactttatgtctgctgtgaatgagtttgtaatt
gaagaaaattcatcatctcctaatcctgtaagtgacccacagagcccggaaatgatggtg
gagtcactttattcctcagttatcaatgcgatcgatagtaggcgcatgcaggatacaaac
gtgtgtggtaaagaggattcaggaggtcacgcttccaacgtccagttagaaaaatgcagg
gttgttgcccaagactctcacttcagtatacaaaccatcaaggaagacctttgccacttc
agagcattagttcaaaaagagcagtgtgacttctcaaattctctaagaggtacagcagta
gaaataagaaacattattgaaaaagtaaggtgttctctggaagtaacactacaagaaaag
catcaaagagaactacagactttaaaaaatgaatatgaagctaaacttgatgcactgata
aaggagagtgaagaaaatgaaaacaaaattaaaaaattgaaaggagacctagtatgtctt
gaggaggttttgcaaaataaagataatgaatttgctttggttaagcatgaaaaagaagcc
gtcatctgcctgcagaatgaaaaggatcagaaacttttagagatggaaaatataatgcat
acgcaaagttgtgaaattaaagaactgaaggagtcccgagaaatagcgctaggagattta
aaaaagctccatgttgaaaatgatgagaagatgcagttgttgagagcagaacttcagtat
ttagagcaaagtcatcttaaggaattagaggacactctgcaagtcaggcatacacaggag
tttgagaaagttatgacagagcacagagtttctttggagaaattaaaagaggaaaatcaa
cacagaattgatcagatacaagagtctcatgcaacaattgtccaagaaaaagaacaacag
ctacaggaattaaaactcaaggtttctgatttgtctgacatgagatgcaagctggaggtt
gaacttgcattgaaggaagctgaaactgatgagattaaacttttgctggaagaaagcaaa
gcccaacagaaggagaccttaaaatctctccttgaacaagagacagaaggtttgagaaca
gagataagtaagttaaaccagaagattcaggataataatgataatcatcaggtaggctta
gcagagctaagaactttaatgacaattgaaaaagatcagtgtatttcagagctaattagt
agacacgaagaggaatcaaatatgcttaaagctgagttgaatgaagtaacatctttgcat
caccaagcatttgaaatagaaaaaaaactgaaagatcaaatagttgaactacaaaataaa
gtggagtcagaattgagtactcttgaaaaacaaaatgataaaaaaatgattcagcaagaa
gaaagatatgaagctattatccataaacttgaaaaagacaaagaaaaattgatcgtgagc
caggaccacgacagagaacagttaattcagaagcttaattctgaaaaagaagaagccatt
aaggctgctctcaatgaatttaaactggggagagacgctgctgagaaagagttactagaa
aaagttcagtatcttgagactcagttagcaaaaagtcctgccagagaggagtcttcaagt
ttagttgctgaacttcaagaaaagcttcaggaagaaaaagccaaatttctagaacaactt
gaagagcaagaaaaaagaaagaatgaagaaatgcaaaatgttcgaacatctttgattgct
gaacaacagaccaattttaacactgttctaacaagagagaaaatgaggaaagaaaacata
ataaatgatctaagtgataagttgaaaagtacaatgcagcaacaagagcgagataaagat
ttgatagagtcactttctgaagatcgagctcgtttgcttgaggaaaagaaaaaacttgaa
gaagaagtcagtaagttgcgtagtagcagcttgcttccttcaccccatgtagctgcagcc
ccagaacgttttggagcttgtgcacctgaactacctggtgaaacagagagatctgccgtg
gaaaccacagacgaagggagattggattcagcaatggagacgagcatgatgtctgtacaa
gaaaatatccatatgttgtctgaagaaaaacagaggataatgctgttagaacggacattg
cagttgaaagaagaagaaaataagcggttaaatcaaagacttatgtctcagagcatgtct
tcagtatcttcaaggcattctgaaaaaatagccattcgagattttcaggtgggagatttg
gtactcatcatcctagatgaacgccatgacaattacgtgttatttactgttagtcctacc
ttatactttctgcattcagaatctctgcctggcctggacctcaaaccaggtgagggtgct
tcaggtgcatctagaagaccctgggtacttggaaaagtaatggaaaaggaatactgtcaa
gccaagaaggcacaaaacagatttaaagttcctttggggacaaagttctatagagtgaaa
gcagtgtcctggaataagaaagtataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (7)   
   KEGG PATHWAY (7)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (5)   
   Pfam (5)   
All databases (60)   

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