KEGG   Leclercia adecarboxylata: APT61_14025
Entry
APT61_14025       CDS       T04232                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
lax  Leclercia adecarboxylata
Pathway
lax03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lax00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    APT61_14025 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lax03019]
    APT61_14025 (rne)
   03009 Ribosome biogenesis [BR:lax03009]
    APT61_14025 (rne)
Enzymes [BR:lax01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     APT61_14025 (rne)
Messenger RNA biogenesis [BR:lax03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     APT61_14025 (rne)
Ribosome biogenesis [BR:lax03009]
 Prokaryotic type
  rRNA processing factors
   APT61_14025 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1 Troponin-I_N
Other DBs
NCBI-ProteinID: ALZ97066
Position
3003197..3006373
AA seq 1058 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARLSGVRCVIVPNDQMQ
TPHYSVLRVRKGEETSTLSYMLPKLHEEAMALPSEEEYAERKLPEQPALAAFVMPEAPPA
PAQESTVAKPAAAKPAADVSQPAAQPGLLSRFFSALKKMFAGEEPQPAPAPVEKKEEKQE
RSPDRRKRQNNRRDRNERRDNRSDNNEGREGNESRDNRDNREGREGRERREGRDDNRRNR
REKPQQNAEDREIRQPAGEESEKSRSRDEQQPRRERNRRRNDDKRQAQQEVKALNREEET
VQDADQEERVQVMPRRKQRQLSQKVRFESQTDEAAVEAVAPQVEPVQSTELAKVDLPAVI
ENAPEQEETTEGRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLAIACASPE
MASGKAWIRYPVARPQEQQFDEQNVTAEAVAPVAPVVDEVITEAAAVVIPEPQPQTAEVE
TSHPEVIAAPVTEQPQIIAPEDVVVAEQVVEDVKAAEPVEITAEAVEPQPVVEVEVETQV
QPEVEIAVEPVAEEKPEVAEVKAPEVKPAPAPVAQVNEGVHHATAPMTRAPAPEYVPEAP
RHSDWVRPAFDFEGKGSAGGHSATHQATAPATRPQPAE
NT seq 3177 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcatcgaacccagccttgaagccgcatttgtagactac
ggtgccgagcgtcatggtttcctccccctgaaagagattgctcgcgaatacttcccttct
aactataacgcccatggccgtccgaacattaaagatgtcctgcgtgaaggccaggaagtt
atcgttcagatcgataaagaagagcgtggcaacaaaggcgccgcgctgaccacctttatc
agtctggcaggcagctatctggtactgatgccaaacaacccgcgcgcgggtggcatctct
cgccgcattgaaggcgacgaccgtaccgaactgaaagaagcgctggccagtcttgaactg
ccagacggcatgggcctgattgttcgtaccgcaggcgtaggcaaatctgccgaagcgctg
cagtgggacctcggcttccgcctgaagcattgggaagcgattcagaaagccgctgaaagc
cgccctgccccgttcctgatccaccaggaaagcaacgttatcgtacgtgccttccgtgac
tatctgcgtcaggacatcggtgaaattctgattgataacccaaaagtgcttgagctggct
cgccagcacattgccgcactgggtcgtcctgatttcaccagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactaccagatcgaatcgcagattgaatccgccttccag
cgtgaagtccgtctgccatccggcggttctatcgttatcgacagcaccgaggcgctgacc
gccatcgacatcaactccgcacgtgcaacccgcggcggcgatatcgaagagacggcgttc
aacaccaacctcgaagcggcagatgagattgcgcgtcagctgcgtctgcgcgacctgggc
ggtctgatcgttatcgacttcatcgacatgacgccagtacgtcaccagcgcgcggtggaa
aaccgtctgcgtgaagcggtgcgtcaggatcgtgcgcgtattcagatcagccatatctcc
cgtttcggtctgctggagatgtcccgtcagcgcctgagtccgtcgctgggtgaatccagc
caccacgtctgcccacgctgtagcggcaccggcaccgtgcgtgacaacgaatctctgtca
ctctctatcctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtccac
gccattgtgcctgtgccggtcgcctcctacctgctgaacgaaaaacgtgccgcggtaagt
gctatcgaagcccgtctgagcggcgtacgctgcgtgatcgtgcctaacgaccagatgcaa
accccgcactactccgtgctgcgcgtgcgcaaaggcgaagagacttcaaccctgagctac
atgctgcctaagctgcatgaagaggcgatggctctgccgtccgaagaagagtacgccgag
cgtaaacttccagaacagcctgctctggcggcctttgtgatgccagaagccccacctgcg
cctgcgcaggagagcaccgttgccaaaccagcagcagctaaacctgcggcagacgtcagc
caaccggcagcgcagcctggcctgctgagccgtttcttcagtgccctgaagaaaatgttt
gctggcgaagagccacaacctgccccggcgccggttgagaagaaagaagagaaacaggag
cgttcaccggatcgtcgtaaacgtcagaacaaccgccgtgaccgcaacgagcgtcgcgat
aaccgttcagacaacaacgaaggccgtgaaggcaatgaaagccgtgacaatcgcgataac
cgtgaaggccgtgagggtcgtgaacgccgcgaaggacgtgacgataaccgtcgcaaccgc
cgtgagaagccgcagcagaacgcggaagatcgtgaaattcgccagccggccggcgaggag
tctgaaaagagcagatcgcgtgatgagcagcagccacgccgcgagcgcaaccgccgtcgt
aatgatgacaagcgccaggcgcagcaggaagttaaagcgctgaatcgcgaagaagagacc
gtgcaggatgcggatcaggaagagcgtgttcaggtcatgccacgccgtaagcagcgtcag
ctgagccagaaagtccgtttcgagtctcagaccgacgaagcagctgttgaagcggtagcg
ccacaggttgaacccgttcagagcaccgaactggcaaaagtcgacctgcctgcggtcatc
gaaaatgcccctgaacaggaagagaccaccgaaggccgtgacaatgcgggtatgccgcgt
cgctcacgtcgctccccgcgtcatctgcgcgtgagcggtcagcgtcgtcgccgttatcgt
gacgagcgttatccgctgcagtcgccaatgccgctggcaatcgcctgtgcgtcaccagaa
atggcctccggcaaagcctggatccgttatccggttgcacgtcctcaggagcagcagttt
gacgagcagaacgtgacggccgaagcggttgccccagtcgcgccagtggttgatgaggtt
atcaccgaggctgcggcagttgttatccctgagccacagccacagactgctgaagtggaa
acgtcacacccggaagtgattgccgcgcctgttactgaacagccgcagatcatcgcccct
gaagatgtggttgtcgcagagcaggtagtggaagacgttaaggctgccgagccggttgaa
attaccgcggaagccgtggagccacagccagttgtagaagtggaagtggaaacgcaagtt
caacctgaagttgagattgctgttgaacctgttgctgaagagaaacctgaagtcgctgaa
gtgaaagcgccggaagtgaaaccagcaccagcgcccgttgctcaggttaacgagggtgtt
caccacgccactgcgccaatgacccgcgcgccagccccggaatatgtgcctgaagccccg
cgtcacagcgactgggtacgcccggcgtttgatttcgagggtaaaggttcagcaggtggt
cacagcgcaacgcaccaggcgaccgcgcctgccacgcgtccacagccggctgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (53)   

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