KEGG   Lactobacillus amylovorus GRL1118: LAB52_06460
Entry
LAB52_06460       CDS       T01954                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
lay  Lactobacillus amylovorus GRL1118
Pathway
lay03030  DNA replication
lay03430  Mismatch repair
lay03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lay00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LAB52_06460
   03430 Mismatch repair
    LAB52_06460
   03440 Homologous recombination
    LAB52_06460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lay03032]
    LAB52_06460
   03400 DNA repair and recombination proteins [BR:lay03400]
    LAB52_06460
Enzymes [BR:lay01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LAB52_06460
DNA replication proteins [BR:lay03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     LAB52_06460
DNA repair and recombination proteins [BR:lay03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     LAB52_06460
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII DNA_pol3_a_NI HHH_6 RNase_H_2 HHH_3 DEDDh_C Auto_anti-p27 T2SSK Zn-ribbon_8 zf-ribbon_3 DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: AEA32221
Position
complement(1259440..1263747)
AA seq 1435 aa
MTNKNDLFLKLLKQVHFPDSFEDNELLQKGKIENVDVYAKEHRWDIHVFFDTPLQYDTYV
ALRKAIEESFASFVNVRFFVNTGDGSDQYLPKYWHYAVQNSNVLQPMAREFLAGQKPEKV
DGRWVIPVDNNIIDGIIEQKALDDLALEMRKYGFFNLKFITQVDQSSMENNLQSLEERHE
EHEKDMQKQFEQTPEKAKPQPRQYPTKRTSYGKRKLDENAPITQIQDVEDGTRNVVIEGN
IFNIESRELKSGAVIFTGEITDYSDSIAFKKFVSDKEQIEQMSAIKPGTWAKMQGTATDD
QYQHDIVFNISSFETVEHVGRTEKYEGDQKRVELHLHTNMSQLDATNTPTDFIKTAKKFG
QKAIAITDHGDVQSFPEAYSTGKATGMKILYGVEANMIDDHALLVLNPAPMTYEDREFVI
FDVETTGLSSVYDTIIEIGAVKMKNGEVLERFDKFINPHHPLSEQTINLTSITDEMVSAA
DDEDVVIKQFQDFYGDRPLCGHNVQFDVGFVNAALRRAGLSEITQPVVDTLEVSRLLHPE
QNRHTLDSLAKKYNVSLEHHHRANQDAEATGYLMYKLLDAFKKKYNEDNLNNLNGYAAHG
EVYKRARPSHMTVLAKDQKGLKNLYKLVSIASTKDFYRIPRTPKSDLADLHEGLLYGSGC
WQGDVFVAMMQKGYDEAREKAKFYDFLEVQPPATYSQLIADGLIKDEDQLEEIISNIYKL
GKELNKPVVATGDSHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAFSFL
GEDIAKEIVIENTNKIADEISEIQPIKDGLYPPHIAHADEEMKKLTYDKAYELYGNPLPK
IVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVN
PLAPHYRCPKCKYSQFFENGEYGSGFDLPDKNCPKCGTPLVKDGQDIPFATFLGFHGDKV
PDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYAKHFDEERNLKLRNA
ELDRLASGIRGVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIH
DNILKFDILGHDDPTMIRHLQDLSGIDPLTIPPDDPGVMSLFSSTKALGVTPEQIGSQTG
TLGVPEFGTRFVRGMLEETKPTTFAELLQISGLSHGTDVWLGNAEDLVNNGTCKLKDVIG
CRDNIMMDLIHWGVKPEVAFSTMESVRHGRGISDENMAVLKKNKKIPDWYIPSCLKIKYM
FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQD
KGMDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGL
GDNAAKQIVAARAEKKFLSKEDLAKRGKVSQTIMNYFEDNGVLEGMPDENQLSLF
NT seq 4308 nt   +upstreamnt  +downstreamnt
gtgaccaataaaaacgatcttttcttaaaattgctcaaacaggttcatttcccagacagt
tttgaagataatgaacttcttcaaaaagggaagattgaaaacgtggatgtttacgctaaa
gaacataggtgggatatccacgttttttttgatactccattacagtacgatacctatgtg
gcattaagaaaagctatagaagaaagttttgcttcttttgtaaatgtaagattttttgtt
aatactggtgatggctcggatcaatatttaccaaagtattggcattatgcagtgcaaaat
tctaatgttttgcaaccaatggcgcgtgaatttttggcgggtcaaaaaccagaaaaagtc
gatggtcgttgggtaataccagtagataacaatattattgacggaatcatcgaacaaaaa
gctttagatgatcttgctctagaaatgcgcaaatatggcttctttaatctgaagtttatc
actcaggttgatcaatcgagcatggaaaataacttgcaaagtttggaagagcggcatgag
gaacatgaaaaggatatgcaaaagcaatttgagcagactcctgaaaaggccaagccccaa
ccgcgtcaatacccaactaaacgaactagttatggtaaacgcaagttagatgaaaatgct
ccgattactcaaattcaagatgtagaagacggtacgcgcaatgtcgttattgaaggtaat
atcttcaatattgagagccgtgaattaaagtcaggtgcggtaatttttaccggtgaaatc
accgattatagtgattcaattgcttttaagaagtttgtttctgataaggaacaaattgag
cagatgtcagcgatcaaaccaggcacctgggcaaaaatgcagggtactgcaaccgatgac
caatatcaacatgatattgttttcaatattagtagctttgaaacagtagaacatgttggt
agaactgaaaagtatgaaggcgaccaaaagcgtgttgagttgcacttgcatactaatatg
agtcaacttgacgctactaatacgccaactgattttattaaaacagctaaaaagtttggc
caaaaagcaattgcgattacggaccatggggatgttcaatccttcccagaagcctacagc
acaggtaaagctactggtatgaagattctttatggtgttgaagccaatatgattgatgat
catgcattactggttttaaatccggctccaatgacctatgaagatcgtgaatttgtaatc
ttcgacgttgaaactacaggactttcatctgtttacgacacgattattgaaattggtgcc
gtaaagatgaaaaatggtgaagtgcttgaaagatttgataaatttatcaatccgcaccat
ccattgagtgaacaaaccattaatttgacttctattacagatgaaatggttagtgcagct
gatgatgaagacgtcgtaattaaacagttccaagacttctacggtgatcgtcctctttgt
ggacacaacgttcaatttgacgttggttttgtcaacgctgctttaagaagagcaggtctc
agcgaaattactcaacctgttgttgatacgcttgaagtatctcgtttgcttcacccagaa
cagaaccgtcacaccttggattcattagctaagaagtacaatgtttcattggaacaccac
catagagctaaccaagatgccgaagctactggttatttgatgtataagttgttagatgcc
tttaagaaaaaatacaatgaagacaatttgaacaacttaaacggttatgcagcacatggc
gaagtatataagcgtgctcgtccttctcatatgacggtgctagctaaagaccaaaaaggt
ttaaagaatctgtataaattagtttcaatcgcaagtacgaaagacttttaccgtattcct
agaacgcctaagtctgatttggcagatttgcacgaaggacttttgtacggttcaggctgc
tggcaaggtgacgtctttgttgctatgatgcaaaaaggttacgatgaagcacgtgaaaag
gccaagttctatgacttcttggaagttcaaccaccagcaacatactcacaattaattgct
gatgggttgatcaaagatgaagatcagcttgaagaaattatcagcaatatctataaacta
ggtaaagaattaaataaacctgttgtagcgactggtgattcgcactatgttgaaccacat
gatgcgatttatcggacgattctgatttctgcgcaacgttctaatccaaatcgaaacaag
ccacaaccagatctacatttttattcaacacaggaaatgctggatgcctttagtttctta
ggtgaggatatagctaaagaaatcgtaattgaaaatactaataagattgcggatgaaatt
tctgaaattcagcctattaaagatggtttgtatccacctcacattgcccatgctgatgaa
gaaatgaagaaattgacctatgataaagcttacgaattgtacggtaatcctttgccaaaa
atcgttaaggaccgtattgatttggagcttaattccattatttctaatggttatgcggtt
atttacctgatttcacaacgtctggtagccaaatccaataaggatggttatctggtaggt
tcccgtggttccgtaggttctagtttggtagccacaatgtctggtattactgaagttaac
ccacttgcaccgcactaccgctgtcctaagtgtaagtattcgcaattctttgaaaatggg
gaatatggttcaggttttgacttacctgataagaattgtccaaaatgtggtactccattg
gtaaaagatggtcaggatattccgtttgccactttcttgggcttccacggtgataaggtt
cctgatatcgatttgaacttctcaggtgactaccaaccagtagctcataactttattcga
gtaatgtttggacccgataattcatatcgtgccggaactattgccactgttgctgataag
acagcctatggttatgctaagcactttgacgaagagcgaaacttgaagttgcgtaatgca
gaactagatcgtttagccagcggaattcgtggggttaagagaacaacgggtcagcaccca
gccggaattgttgtagttccagatgatatggatatttacgactttactcctgtgtcatac
ccagccgatgatgtgaatgctgcttggttaattacgcactacgacttccactccattcac
gataacatcttgaagttcgatattctgggacacgatgacccaacgatgattcgtcacttg
caggacctgtcaggaattgatccactgactattccaccagatgatccaggtgttatgtca
ttattctcaagtactaaggctttaggagttactcctgaacaaattggttcacaaacaggt
actttgggagtaccagaatttggtacgcgtttcgttagagggatgcttgaagaaactaag
ccaactacttttgccgaattattgcagatttctggtttatcacacggtactgacgtatgg
ctaggcaatgccgaagatttggttaacaacggtacttgcaagttgaaggacgttattggt
tgtcgtgataacatcatgatggacttgattcactggggcgtaaaaccagaagtagccttc
tcaaccatggaatcagttcgtcacggtcgcgggattagtgatgaaaacatggctgttctt
aaaaagaacaagaagattccagattggtacattccatcttgtttgaagatcaagtacatg
ttccctaaggctcacgccactgcctatattttgatggctttgagaattgcttggtttaaa
gtgtactatcctgaaatttactacactgcttatttctcagttcgtgccgatttgtttgat
ttagttgcaatgagtcatggtaaaaatactgttaaagcagcgatgaaagaaattcaagat
aaaggaatggatgcctcagctaaggataagagtttgttaacggttttggaaattgctaat
gaatgtcttgaacgtggcattaagatcaagatggttgatatcgatcaatctgaagccacc
gactttaagatcttggataagcatactattttagctccatttaacgccgtacctggttta
ggtgataacgctgctaagcagattgttgccgcccgtgccgaaaagaaattcttatctaaa
gaggatttggctaagcgtggtaaagtttcacaaactatcatgaactattttgaagataat
ggcgtcttggaagggatgcctgacgaaaatcaattgtctcttttctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (27)   

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