KEGG   Laccaria bicolor: LACBIDRAFT_245877
Entry
LACBIDRAFT_245877 CDS       T01044                                 
Symbol
HDA16202
Name
(RefSeq) histone deacetylase complex, catalytic component RPD3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lbc  Laccaria bicolor
Pathway
lbc03082  ATP-dependent chromatin remodeling
lbc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lbc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    LACBIDRAFT_245877 (HDA16202)
   03083 Polycomb repressive complex
    LACBIDRAFT_245877 (HDA16202)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lbc03036]
    LACBIDRAFT_245877 (HDA16202)
Enzymes [BR:lbc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     LACBIDRAFT_245877 (HDA16202)
Chromosome and associated proteins [BR:lbc03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     LACBIDRAFT_245877 (HDA16202)
   HDAC complexes
    Sin3A-HDAC complex
     LACBIDRAFT_245877 (HDA16202)
    BRAF-HDAC complex
     LACBIDRAFT_245877 (HDA16202)
    REST complex
     LACBIDRAFT_245877 (HDA16202)
    SHIP complex
     LACBIDRAFT_245877 (HDA16202)
    MiDAC complex
     LACBIDRAFT_245877 (HDA16202)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     LACBIDRAFT_245877 (HDA16202)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    LACBIDRAFT_245877 (HDA16202)
  Chromatin remodeling factors
   NuRD complex
    LACBIDRAFT_245877 (HDA16202)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 6072120
NCBI-ProteinID: XP_001876901
JGI: 245877
UniProt: B0CZJ3
AA seq 408 aa
YPADVGAYTYGLGHPMKPHRIRVTHDLVTAYGMLDKMHVLRAKRATPETMTSFHTDEYVH
FLNRVTPETSEELTYHGTRFLVGEDNPAFEGVFEFCSISAGGSIAAAQRITSGAADIAIN
WAGGLHHAKKREASGFCYINDIVLGILELLRTYPRVLYIDIDCHHGDGVEEAFYTTDRVM
TCSFHKFGEYFPGTGTQEDKGRGRGRGYAVNVPLKDGITDESFRSVFEPVITKILETFQP
SAIVLQCGADSLAGDKLGCFNLTMHGHAHCVQFVRKQNIPFILLGGGGYTVKNVARTWTY
ETACALGIEESIDPNLPWNQYFEWFGPRYRLEVAENNMDDLNVRDGSLEKVRITALEQLS
QLPGAPSVGMHDVPRQNDDLGRDELDDRLARTSPFPSFLPSFLPSLPY
NT seq 1227 nt   +upstreamnt  +downstreamnt
tatccagccgacgtcggtgcatatacctatggcttaggacacccaatgaagcctcacagg
atacgggtcacacacgatctagtcaccgcctatggcatgctcgacaagatgcacgtcttg
agagctaaacgcgccacacccgaaacaatgacctccttccacacagacgaatacgtccac
tttctcaacagagtaactccagaaacgtccgaagagctgacttaccacggaaccagattt
ctcgtaggagaagacaaccccgcattcgaaggcgtctttgaattctgctccatctccgca
ggaggctcaatagccgccgcccaacgcataacctccggcgcagccgacatagccataaac
tgggccggcggcctacaccacgccaaaaaacgggaagcctcggggttctgctacatcaac
gacatcgtcctcggcatcctcgagctcctacgcacctacccacgcgtcctctacatcgac
atcgactgccatcacggcgacggcgtcgaagaagcgttctataccaccgatcgcgtgatg
acgtgcagctttcataaatttggagagtactttcctgggacggggacgcaggaggataaa
ggacgtgggaggggacgtgggtatgctgttaatgttccgcttaaggatgggattacggat
gagagttttaggagtgtttttgaacctgtcatcacgaaaatcctagaaaccttccaacct
tccgctatagtcctccaatgcggtgcagattctctagcaggtgacaaactgggttgtttc
aacctaacaatgcacgggcacgcacactgtgtccaattcgtgcgaaaacagaatataccg
ttcatactcctcggtgggggtgggtacaccgttaaaaacgtagcacggacatggacgtac
gagacggcgtgtgcgcttgggatagaagagagcattgatccgaatttaccgtggaatcag
tactttgagtggtttgggccacggtataggttggaggttgcggagaataatatggatgat
ttgaatgttagggatgggtctttggagaaggttcggataactgccctggaacaattatca
cagttaccgggcgcaccgtccgtagggatgcatgatgtccctagacaaaatgatgatttg
ggacgggatgagttggatgatcggttagctcgtacgtctccctttccttctttccttcct
tccttccttccttctcttccttactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

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