KEGG   Lonsdalea britannica: CKQ53_05845
Entry
CKQ53_05845       CDS       T05623                                 
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lbq  Lonsdalea britannica
Pathway
lbq03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lbq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CKQ53_05845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lbq03400]
    CKQ53_05845
Enzymes [BR:lbq01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     CKQ53_05845
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CKQ53_05845
DNA repair and recombination proteins [BR:lbq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CKQ53_05845
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: AXW86561
Position
1252348..1253157
AA seq 269 aa
MPELPEVETSRRGIEPYLVGHTIMHAEVRNARLRWPVSPEIMSLSDEPVLSVQRRAKYLL
IELARGWMIVHLGMSGSLRVLPEYVEPGKHDHVDLVLDSGKVLRYTDPRRFGAWLWSADP
ATSSVLAHLGPEPLSDAFSGDYMFDKSRGRKTPIKLWIMDNKLVVGVGNIYASESLFSAG
ILPERAAGSLSEAEFQLLADTIKKVLLRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRS
GEPCRHCGTLIESLKQGQRSTFFCRTCQR
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcctgaattaccagaggtggaaaccagccgccgggggattgaaccctatctggtcgga
cataccattatgcatgcggaagtgcgcaatgcgcgcctgcgctggccggtatcccctgag
attatgtcgctgagcgatgaaccggtgctcagcgttcagcgtcgcgcaaaatacctactg
attgaattggctcgcggttggatgattgttcatctcggcatgtcgggcagtttgcgtgtg
ctgcctgaatatgtggagcccggcaagcatgaccatgtcgatctggtcctggatagcggc
aaagtactccgctacaccgacccacgccgcttcggcgcctggctgtggagcgcggatccg
gcaacgagttccgtgctggctcatctgggaccggagccactcagcgatgcgttcagcggc
gactatatgttcgataagtcgcgaggccggaagacgccgataaagctttggattatggat
aacaagctggtcgtcggcgtgggtaacatctacgccagcgaatccctgttcagcgcgggc
attctgccggagagagccgcaggctcgctgagcgaggctgagttccagctattagccgac
accatcaagaaggtgctgctacgctccatcgaacaaggcgggactacactgcgggacttc
ctgcagtcggacggtaaacccgggtattttgcgcaggaactgcaggtctacggccgcagc
ggcgaaccttgtcgtcactgtgggacgctgattgaaagcctgaaacaggggcaacgcagt
accttcttctgccgtacctgccagcgctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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