KEGG   Lonsdalea britannica: CKQ53_07965
Entry
CKQ53_07965       CDS       T05623                                 
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lbq  Lonsdalea britannica
Pathway
lbq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lbq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CKQ53_07965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbq03019]
    CKQ53_07965
   03009 Ribosome biogenesis [BR:lbq03009]
    CKQ53_07965
Enzymes [BR:lbq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CKQ53_07965
Messenger RNA biogenesis [BR:lbq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CKQ53_07965
Ribosome biogenesis [BR:lbq03009]
 Prokaryotic type
  rRNA helicases
   CKQ53_07965
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 DeaD_C AAA_22 AAA_19
Other DBs
NCBI-ProteinID: AXW86924
UniProt: A0A1X3S052
Position
1701656..1703515
AA seq 619 aa
MTKLETSFADLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
AVPLLNNLKPELKAPQILVLAPTRELAVQVSEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSLTTRPDISQSYWMVHGVRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNV
ERTMKLTIPEVELPNAELLGERRLAKFAAKVQLQLESSDLDMYRALLAKLQPQEELDMET
LAAALLKMAQGERPLILPPDPVFDRRPRREMRDRDDRFERRREGGRDNARDGDRPQRRER
RDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGD
ILSHFTRTRILNKPMNMQLLGDAQPHERREGGRGGRSFGDRPNGGRPGNGGRGRSFSGER
REGGGERRGNRAPRQPSNS
NT seq 1860 nt   +upstreamnt  +downstreamnt
atgactaagcttgaaacctcttttgccgatttggggctgtctgctccgattattaatgcc
ctaaccgatctgggctacgaaaagccttcgccgattcaggcggaatgtattcctcacctg
ctgaatggtcgtgatgtgctgggtatggcacagaccggcagcggtaaaaccgccgcattt
gcggtgccgttattgaataacctgaaacctgaactgaaagcaccgcagattctggtgctg
gcgccgacccgtgagctggcggttcaggtctctgaagcctgtaatgacttcgccaaacac
atgcatggcgtcaacgtggttgccctgtacggtggtcagcgttatgacgtacagctgcgc
gctttgcgtcagggaccgcagattgtggtcggtacgccgggtcgtttgcttgaccatctg
aaacgcggcacgctggacctgtccaacctgagcggtctggtactggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgtagaaaacatcatggcgcagatcccggctgaa
catcagaccgcgctgttctccgcgacgatgccggaagcgattcgtcgtattacccgtcgt
ttcatgaaagatccgcaggaagtgcgtattcagtcaagcctgacgacgcgtccggatatc
agccagagctactggatggtacacggcgttcgtaaaaacgaagcgctgatccgtttcctc
gaagcggaagattttgatgccgcgattatcttcgtgcgtaccaaaaacgcgacgctggaa
gtggctgaagcgctggagcgcagtggttacaacagtgctgcactgaacggtgacatgaac
caggccctgcgtgaacaaacgctggaacgtctgaaaaatggtcgtctggatatcctgatt
gcgactgacgttgctgctcgtggtctggatgttgaccgcattagcctggttgtgaactac
gatatcccgatggatgcggaatcctacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgccggccgtgcgatcctgttcgttgataaccgcgaacgtcgcctgctgcgtaacgtt
gagcgcaccatgaagctgaccattcctgaagtggaactgccgaacgctgaactgctgggc
gaacgtcgtctggccaagtttgccgccaaggttcaactgcagctggaaagcagcgatctg
gatatgtaccgtgcgctgttggctaaactgcagccgcaggaagagctggacatggaaacg
ctggctgctgcgctgctgaaaatggcgcagggcgaacgtccgctgattctgccgccggat
ccggtattcgatcgccgtccgcgtcgtgaaatgcgcgatcgtgacgatcgtttcgagcgt
cgccgtgaaggtggccgtgataatgcgcgtgacggtgaccgtccgcagcgtcgtgaacgt
cgtgatgtcggcgacatggaactgtatcgtatcgaagtaggccgtgatgatggcgttgaa
gtgcgtcacatcgtgggcgcgattgccaatgaaggcgatatcagcagccgttacatcggt
aacatcaaactgttcggtactcattctacgattgagctgccgaaagggatgccgggcgat
attctgtcacacttcacgcgcacgcgtattctcaacaaaccgatgaacatgcagcttctg
ggcgatgcccagccgcacgagcgtcgtgaaggtggccgtggtggtcgttcattcggcgat
cgtcctaacggtggtcgtccgggtaacggcggtcgtggtcgctctttcagcggcgaacgt
cgtgaaggcggtggtgaacgtcgcggtaaccgtgcgccacgtcagccgtccaactcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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