KEGG   Lates calcarifer (barramundi perch): 108876388
Entry
108876388         CDS       T04895                                 
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X2
  KO
K10597  ubiquitin conjugation factor E4 B [EC:2.3.2.27]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04120  Ubiquitin mediated proteolysis
lcf04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108876388
   04120 Ubiquitin mediated proteolysis
    108876388
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lcf04121]
    108876388
Enzymes [BR:lcf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108876388
Ubiquitin system [BR:lcf04121]
 Ubiquitin ligases (E3)
  U-box type E3
   108876388
SSDB
Motif
Pfam: Ufd2P_core U-box
Other DBs
NCBI-GeneID: 108876388
NCBI-ProteinID: XP_018521377
Position
LG6:complement(11327649..11346355)
AA seq 1190 aa
MEELSADEIRRRRLARLAGGQTSQPSTPLSTPLTSPQRETPPGPLHGPSGAAPQPLPPAA
SQSLGLSVHSGTPATSPMGTSGVAYGSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDID
TASCEKSMSQVDVDSGIENMEVEDSDRREKRNLTEKETSASSDVSEEQALQLICKILRVS
WKEQDRDVIFLPSLAAEFHQNPKDAYSDFKDLIGQILMEVLMMSTQSRIHNPFASLTATS
QPIAAAKSPDHRLTLVQPSSLGGSPMGPSAGSFGASSLSSLGACGGGMSCDSASDRFTIE
ACKETEMLNYLIERFDSVGMEERKAPKMCSQPNVSQLLSNIRSQCISHVALVLQGTLTQP
RSPLQQSLLVPYMLCRNLPYGFIQELARITHQEEEVFRQIFIPILHGLALAVKECSFDSD
NFKFPLMALAELCEIKFGKTHPVCNLVTSLPLWCPKPLSPGCGREIQRLSYLGAFFSLSV
FAEDDTKVGDKYFSGPAITMENTRVVSQSLQHYLESARGDLFKVLHNILLNGETRDLALN
YMAALVNYNVKKAQMQTDDKLVSTDGFMLNFLWVLQQLSMKIKLETVDPYYIFHPRCRLA
VSLEETRLKATMEELKTWLSELHEDPTKFSEPKFPTECFFLTLHTHHLSILPGCRRYIRR
LRAIRELNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLQGQFNILKLVRAKACADVG
LLDENLLRRCLQFYSTVIQLILRMVDPAYPNITLPLNPEIPKSFAALPEFYIEDVAEFLL
FVVQYSPQVLYEPCVQDIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRFS
EMMENHPLSVKQLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTF
MEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWEQLPREQQQSRQ
SQLTQDERVSRSYLALATETVEMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKC
RDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMRKA
GIKSSIAIEKFKLLSEKVEEIVAKNSQSEMDYSDAPDEFKDPLMDTLMTDPVMLPSGNIM
DRSIILRHLLNSPTDPFNRQPLTESMLESVPELKERIHAWMREKQGGRLV
NT seq 3573 nt   +upstreamnt  +downstreamnt
atggaggaattgagcgcagatgagattcgcaggaggcgactggcgagactggcaggggga
cagacatcacagcccagcacccctctcagcacacccctgacatccccacagagagagact
ccacctggacccctccatggaccctcaggtgccgcacctcagcccctgccaccagctgcc
tcccaatcgttggggctcagtgtccacagtggtacccctgccacatcccctatgggcacc
tctggggtggcatatggtagtcagagcagcgagggtgtcagctccctctccagctctccc
tccaacagccttgagactcagtcccagagtttgtcccgatcgcagagcatggacattgac
actgcctcctgtgaaaagagcatgtcccaggtggatgtggactcagggatagagaacatg
gaggtggaggacagcgatcgcagggagaagaggaacttgactgaaaaggaaacctctgca
agctcagatgtctctgaagagcaggctctgcagctcatttgtaagatcctccgcgtatcg
tggaaggagcaggacagagatgtcatctttctcccttcactggctgcagagtttcaccag
aaccctaaagatgcatactctgacttcaaagacctgattggccagatcctgatggaagtc
ttaatgatgtccacccagtcacgtatccacaaccccttcgccagcttgacagccacatct
cagccaattgcagcagccaaatctcccgaccaccgtctgacgctggtgcagccctccagc
ctaggtggcagtcccatgggccccagtgcagggtcctttggagccagctctctgtccagt
cttggtgcatgtggaggagggatgtcctgcgattcagccagcgaccgcttcaccattgaa
gcatgcaaagagacagagatgctgaactacctcattgagcgttttgacagtgttggcatg
gaggagaggaaagctcccaagatgtgcagccaaccaaatgtcagccagcttctcagcaac
attcgctctcagtgtatttctcatgttgcccttgtcctgcaaggcaccttgacccagcct
cgaagccctctccagcagtctctgctggtaccttatatgctgtgtcggaaccttccatat
ggctttattcaggagctggcacgcattacccaccaggaggaagaagtgttcagacagatc
ttcattcccatcctccatgggctggctcttgcagttaaagaatgttcttttgacagtgac
aactttaaattccccctcatggcattagctgagctttgtgaaatcaagttcgggaagact
caccccgtgtgtaatttggtaacgtcactgcctctatggtgtcccaaacctctgagccct
ggttgtggccgagagatccagagactgtcctacctgggagccttcttcagtctctctgtg
tttgctgaggatgataccaaagtaggagacaagtatttctcgggcccagccatcaccatg
gagaacacgcgagttgttagccaatcactgcagcactacctggagtcagcaaggggtgac
ctgttcaaagttctccataacatcctactaaacggagagacacgagacttagctcttaat
tacatggcagctttagtcaactacaatgtgaagaaagctcagatgcagactgacgacaaa
ctggtgtctacagacggcttcatgctcaacttcttatgggtgctgcaacagctgagcatg
aagatcaagctggagacagtggacccttattacattttccacccacgctgtcgccttgct
gtcagcctagaagaaacacgtctaaaggctactatggaggagctcaaaacctggctaagt
gaactgcatgaagaccccaccaagttctcagaacccaaattccccaccgagtgtttcttc
ttgacactgcacacccaccatttgtctatcctgcctggctgcaggcgctacatccgcagg
ttgcgagccatccgtgaactcaataggactgtagaggagctgaaaaacagtgaaagccaa
tggaaagattctcccctggccagtcgacacagagagatgctcaagcgatgcaaaacccag
ctgcaaggtcagtttaacatccttaaactggtgcgagccaaagcttgtgctgacgtgggc
cttctggatgagaacctgctccgcagatgtctgcagttctacagcacagtcattcagctc
attctccgcatggtggaccctgcctaccccaacattaccctgccactgaaccctgagatt
cctaaaagctttgctgctctccccgaattctacattgaagatgtggccgagtttctgctt
tttgttgtgcagtattcaccccaggttttatatgagccgtgtgtccaggacattgtcacc
ttcttggtggtgttcatctgcagccagaactacatcaggaacccctaccttatcgccaag
ttggtggaggtgctgttcgtcaccaaccctgctgtacagcctcgtactcagcgattttct
gaaatgatggagaaccacccgttgtccgtcaaacagctggtccccgccctcatgaagttc
tacactgatgttgagcataccggcgccaccagcgagttctatgataagttcactatacgg
taccatatcagcacgatcttcaagagtctctggcagaacattgcgcaccatggcaccttc
atggaggagttcaactctggcaagcagtttgtgcgctacatcaacatgctgataaacgac
accaccttcttgttagacgagagccttgagtccctgaagcgtatccacgaggttcaagaa
gagatgaagaataaggagcagtgggagcagttgcccagggagcagcagcagagccgccag
tcccagctgactcaggatgagcgggtgtctcgctcttatctggctctggccacagagaca
gttgaaatgttccacatcctcacgaagcaggtccagaagcctttcctcaggcctgagctg
gggcctcgtttagctgccatgctgaactttaaccttcagcagctctgtggacctaagtgt
cgtgacctgaaggtggagaaccctgaaaagtatgggtttgagcccaagaaactcttagac
cagttgacggacatctacctgcagctagactgcgcccgcttcgctaaagcaattgcagac
gaccagcggtcgtatagccgtgagctctttgaggaggtgatctcaaagatgaggaaagcc
ggaattaagtcctccatcgccatcgaaaaattcaagctgctgtcggaaaaggtggaagaa
attgtcgccaagaactcccagtctgaaatggactacagtgatgcacctgatgagttcaaa
gaccccctgatggacacgctgatgactgaccctgtgatgctgccttctgggaacatcatg
gaccgatctatcatcctacgccacctgctcaactcccccactgatcccttcaacaggcag
ccactcacagagagtatgctggagtcagtccctgagctgaaggagaggatccatgcctgg
atgagagagaaacagggcggacggcttgtctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   RefGene (64)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (85)   

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