KEGG   Lates calcarifer (barramundi perch): 108877077
Entry
108877077         CDS       T04895                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX28
  KO
K20096  ATP-dependent RNA helicase DDX28 [EC:3.6.4.13]
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lcf03009]
    108877077
Enzymes [BR:lcf01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     108877077
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  Other ribosome biogenesis factors
   108877077
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22
Other DBs
NCBI-GeneID: 108877077
NCBI-ProteinID: XP_018522533
Position
LG2:complement(24741512..24743646)
AA seq 567 aa
MQSVKVAYLALAASRVLCSSRSYCLQLGKISARCRVNCSVSQTRLCRTAATIEETAVIRV
PRYLQKRVENVKQTRGKNKISTVKAGKLLIQSKNPVLNQSAGYVVGKFEQPTLCSSGWKH
NKSFGDYFTINNIKTVAPYVTETQKEDTEQKSSVTFNNLHICKELVEALDRINIIHPTTV
QLQTIPKVMKGHNILCAAETGSGKTLSYLLPIVNRLQAEKKPHMYTENSRKIHTLVLVPS
RELAEQVAAVSRTLCAPFGLLTRTVGGGRGVGHIKMVFKRNHPDILVATPGALVKALRRR
CLDLDELSFFVIDEADTMFDPSFSTMLESILHHANIASEPKQTRGLVHKAQLLVVGATFP
GGVGEVLKQVTDLGSIVVIKSKMLHFLMPHVKQTFLKVKGADKILELNQALKLLQHEKGG
GGALVFCNKSATVNWLGHSLDEMGVQHARLQGEMPAAVRSGIFHSFQKGAVDVLICTDIA
SRGLDTSRVRLVVNYDFPESHTDYIHRAGRVGRAGGVEDGEVLSFVTHPWDVELVQKIEI
AARRRTSLPGMESEIHEPKAKVEEAQQ
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgcagtctgtgaaggtcgcttatttggctttagctgcgtcgagagttctctgctcaagt
cggagttactgtcttcagcttggtaaaatatcggctcgctgtcgtgttaattgttccgtc
agccagactcgcctttgtcggacagcagccacgatagaggagaccgcggttattcgtgtt
cctcgctacttgcagaagcgcgtcgagaacgtgaagcagactcgaggcaaaaacaaaatc
agcaccgtcaaggctggcaagctcctgatccagagcaagaacccagttctcaaccagtct
gcgggatacgttgttgggaagttcgagcagccaactctgtgctcctcaggatggaaacat
aacaaatcattcggtgactatttcaccattaacaacatcaagactgttgcaccctatgtg
actgaaactcagaaagaagatactgaacaaaaatcatctgtgaccttcaataacctccat
atttgcaaggagcttgtggaagctttggacagaatcaacattatccatcccaccactgta
cagctacagaccatcccaaaggtcatgaaaggtcacaatattctttgtgccgcagagacg
ggcagtgggaaaactctgagctacctgcttcctattgttaacagactacaggctgaaaag
aaaccacacatgtatactgagaactcaaggaaaattcacactttagttcttgtgccttcc
agagagcttgctgagcaagtggcggctgtgtcccggactctgtgtgctccatttggcttg
cttaccaggactgtgggaggtgggcgtggtgtaggacacatcaagatggtcttcaagagg
aatcatccagatattttagtagccacaccaggtgctctggtcaaggccctgcggagacgc
tgcctggacttggacgagcttagcttctttgttatagacgaggcagacactatgtttgac
cccagcttttctaccatgctggagagcatcctacaccacgcaaacattgctagtgaaccc
aagcaaacacggggcttggtccataaagcccagttgctggtggtgggggccaccttcccc
ggtggtgtcggggaagtgctcaagcaggtgacagacctcggcagcatcgtggtcatcaag
agtaagatgctgcacttcctcatgccgcacgtcaagcagaccttcctgaaggtaaagggt
gctgacaagatcctggagctcaaccaagccctgaagctgctccaacatgaaaaaggagga
ggtggtgctctggtgttctgcaacaagtctgccaccgtcaactggctggggcactcgctg
gatgagatgggggttcagcacgcacgtctacaaggggagatgcccgctgccgtgcgttca
ggaatcttccactccttccagaagggtgcggtggatgtgctaatttgcacagacattgcc
tctcgtggcctggacacatcccgcgttcgcttggtcgtcaactatgacttcccagaatcc
cacacggactacatccacagggcagggagagtggggagagcgggaggggtggaggatggg
gaggtgctcagcttcgtcactcatccctgggatgtggagctggtgcagaagattgagatc
gctgcgcgcaggagaaccagtttaccggggatggaatctgaaatacatgagccaaaagcc
aaagtggaagaggcacagcagtag

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