KEGG   Lates calcarifer (barramundi perch): 108879625
Entry
108879625         CDS       T04895                                 
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
  KO
K04850  voltage-dependent calcium channel L type alpha-1C
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04010  MAPK signaling pathway
lcf04020  Calcium signaling pathway
lcf04260  Cardiac muscle contraction
lcf04261  Adrenergic signaling in cardiomyocytes
lcf04270  Vascular smooth muscle contraction
lcf04912  GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    108879625 (cacna1c)
   04020 Calcium signaling pathway
    108879625 (cacna1c)
 09150 Organismal Systems
  09152 Endocrine system
   04912 GnRH signaling pathway
    108879625 (cacna1c)
  09153 Circulatory system
   04260 Cardiac muscle contraction
    108879625 (cacna1c)
   04261 Adrenergic signaling in cardiomyocytes
    108879625 (cacna1c)
   04270 Vascular smooth muscle contraction
    108879625 (cacna1c)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:lcf04040]
    108879625 (cacna1c)
Ion channels [BR:lcf04040]
 Voltage-gated cation channels
  Calcium channel, voltage-gated (Cav)
   108879625 (cacna1c)
SSDB
Motif
Pfam: Ion_trans CAC1F_C Ca_chan_IQ GPHH PKD_channel
Other DBs
NCBI-GeneID: 108879625
NCBI-ProteinID: XP_050933644
Position
LG18:5893890..6099395
AA seq 2372 aa
MLRGLFQRKPKHERLEEEPEVRFKGLLVSERDLGYTYVQPGGSDYSPPPPLPRPPPPGLT
NEHSGSGSRGDHGGGGGGVNHGVGVVGLAPEHIPTPGAALSWQAAIDAARQAKMMGNAAS
GGGAGLGSGGGGPISTASSTQRKRQHYSSKPKKQTATTATRPPRALLCLTLKNPIRRACI
SIVEWKPFEIIILMTIFANCVALAVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKV
IAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKGDGATPIGGKAAGFDVKALRA
FRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTC
FYDHGTTAEEKPAPCAPDGAYGRHCTQNGTKCTVGWEGPNDGITNFDNFAFAMLTVFQCI
TMEGWTDVLYWMQDAMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGD
FQKLREKQQLEEDLKGYLDWITQAEDIDPENEEEGMDDDKPRNRVSPAHLGKKTSKLAWF
SHSTDSQDVSMPASENESVNTDNAPGGDVEGETCCTRLANRISKSKFSRYSRRWNRLCRR
KCRAAVKSQVFYWLVIFLVFLNTLTIASEHHKQPQWLTDVQDIANKVLLALFTGEMLLKM
YSLGLQAYFVSLFNRFDSFVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWN
SLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDETRRSTFDNFPQSLL
TVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLA
DAESLTSAQKEEEEEKERKKLARLASPEKRHDNEKPPLEEEKKEKIELKSITSDGETNTA
TKINMDDYCGDESEEKNPYPANDYIGDDDDDEPEMPVGPRPRPLSDIQLKEKAVPMPEAR
AFFVFSHTNKFRVLCHKIVNHNIFTNLILFFILLSSISLAAEDPVKNDSFRNQILGYADH
VFTGLFTIEIILKMTAYGAFLHKGSFCRNYFNILDLVVVSVSLISSGIQSSAINVVKILR
VLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACIGVQLFKGKFFSC
TDNSKQTQAECRGSYIMYKDRDVGKPERASRVWENSEFNFDDVLQGMMALFAVSTFEGWP
GLLYRAIDSHAEDVGPIYNYRVVISIFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYK
NCELDKNQRQCVEYALKARPLRRYIPKNPYQYKVWYVVNSTYFEYLMFTLILLNTICLAM
QHHGQTKNFNDAMNILNMLFTGLFTVEMILKLIAFKPRGYFSDPWNVFDFLIVIGSIIDV
ILSEINPADSSSSSSSSSSSSSSSSSSSHPPVVRPMVRFDGNLVRLPTSFTNPPSLHPSI
PSSATPSMGLQNSEENARISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVA
LLIVMLFFIYAVIGMQMFGKIALRDQTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLA
CSANRPCEKGSTNENSTSNEECGSQFAIIYFVSFYMLCAFLIINLFVAVIMDNFDYLTRD
WSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVS
MNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANEELRAIVKKIWKRTSMKLLDQVV
PPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVAKVPPKTALSLQAGLRTLHDIGPEI
RRAISGDLTVEEELDKGLKEPVSAASEDDIFRVKRTGGLFGNHVNYYNQSDGRGSFPQSF
TTQRPLHISQKGSPCEGESPSHEKLMDSTTFTPSSYSSSGSNANINNANNTGMAGVATQG
ISRFPSPSISTVDGHTGQPLTPILLPRSAWCFPPKRTCFYDNLMRSDSSDSHLPIIRRGE
GSTEETYDESYGDDREYHEDDHSLSSDMLVYHDETCKQLAPMEEGEQDDDRRGGGGWQSP
RRVFLCPTSLGRRSSFHLECLRRQSRPDVSQKTAVPLHLVHHQALAVAGLSPLLRRSHSP
TLFSRLCSTPPASPTAHGSDASYQRVPSLRLEGSNSLEKLNTSLPSVNCGPWYSDSNGNS
RGPSPSPTPSVSVSSQRAPRPVSLTVPSLLGKDSSSLCHGSAGSLVEAVLISEGLGHFAQ
DPSFIEATKAELADACDMTIEEMEHAANNILNGNTTTNATSSTSSTSQHSPNGNLLPFHT
AAAAATHRDRVVSLSPSEGGGEAGGSRGSVHGPSSVEERQELLAGGRGQEEEEEEAGERE
EGHHRSSGVSGAARQRNSGLLEDEDMECVTSL
NT seq 7119 nt   +upstreamnt  +downstreamnt
atgctgagaggcctgtttcagaggaaacctaaacatgagagactggaggaggaacctgag
gtcagatttaaaggcttgctggtgtcagagagagacctgggatacacatatgtccaacct
ggaggctccgactattctccccctcctcccctgcctcggcctcctccacccggcctgaca
aatgagcatagtggcagtggtagccgtggtgaccatggcggaggaggaggcggggtcaac
cacggggtgggcgtggttggcctggccccagagcacatccccacaccaggggcagccctg
agctggcaggcggccatcgatgctgcgcgccaggcgaagatgatgggcaatgctgcatca
ggtggaggggcagggcttgggtctggagggggcgggcccatctccacggccagctccacg
caaaggaagagacaacactatagctctaagcccaagaaacagacagcgacgacagctaca
aggccgccacgggccctactctgtctcacgctcaagaaccccatccgcagggcctgcatc
agcatcgtagagtggaaaccatttgagatcatcatcctgatgaccattttcgccaactgt
gtggccttagccgtctatatccccttccctgaggatgactcgaacgccaccaactccaac
ctggagcgtgtggagtatctgttcctcatcattttcacagtggaggcgttcctgaaggta
atagcttatggcctgctctttcaccccaacgcctacctgaggaacggctggaatctgctc
gacttcatcattgtagtcgtagggttatttagtgcgatcttggaacaggccaccaagggg
gacggggccacgcctattggtgggaaggcggcaggcttcgatgtcaaggctctgagggca
ttcagagtactcagaccgctcagactggtctctggagtaccaagtttacaggttgtgttg
aactccattatcaaagccatggttcctctgctccatattgccctgctggtcctcttcgtc
atcatcatctatgccatcatcggcctggagctcttcatgggcaagatgcacaagacctgc
ttttacgaccatggaaccactgcagaggaaaagccggcaccatgcgcccctgatggtgct
tatggtcgacactgtacacagaatggaaccaagtgcacggtgggatgggagggccccaat
gacggcatcaccaactttgacaactttgcctttgccatgttaacggtgttccagtgtata
accatggagggctggacggatgtactgtactggatgcaggatgctatgggctatgagctg
ccatgggtctattttgtctctctcgtcatcttcggctcctttttcgttctcaatctcgtt
ctgggggtgttgagcggagagttttccaaggagagggagaaggccaaggcacgtggtgac
ttccagaaactcagagaaaaacagcaactggaggaggacctcaagggctatttagactgg
atcactcaggctgaagacattgacccagagaatgaagaggagggcatggacgatgacaaa
cccagaaaccgagtgtctccagcccacctgggtaagaagaccagtaagcttgcctggttc
agtcactctactgactctcaggacgtgagcatgccagccagtgagaatgaatcagtcaac
acagacaacgcccccgggggagatgtggagggggagacctgctgtacccggctagcaaat
aggatctccaaatccaagttcagtcgctactctcgaaggtggaacaggctgtgcagaagg
aagtgccgtgcggcggtcaaatcgcaggttttctattggctggtcatcttcctggtgttc
ctcaacactcttaccatcgcctctgaacatcacaaacagccacagtggttaactgacgta
caagatatagccaataaggtgttgctagcactcttcactggtgagatgctgttgaagatg
tacagtctgggcctgcaggcgtactttgtttcgctctttaaccgcttcgacagcttcgta
gtatgtggaggaattctggagaccattctggtggaaaccaagatcatgtctcctctcggc
atctctgtgttgcgttgtgtacgcttgctacgaatcttcaaaataaccagatactggaac
tcactgtccaacctggtggcctccctgctaaactctgttcgctccatcgcttccctgttg
ctcctgctcttcctcttcattatcatcttctccctgcttggcatgcagctctttggggga
aaattcaacttcgacgagacccgacgcagcactttcgacaattttccccagtccctgctc
acagtgtttcagatcctgactggagaggactggaactctgtgatgtatgatggcatcatg
gcatacggtggaccatcattcccaggcatgctggtctgcatctacttcatcatactcttc
atatgcggaaactatatcctgctaaatgtcttcttggccattgctgtagacaatctggca
gacgccgagagcctgacatctgcccagaaagaagaggaagaggagaaggagaggaaaaaa
ctggccagactcgccagtccagagaagcgtcatgacaacgagaagccgcctctggaggag
gagaagaaggagaaaatagagctgaagtccatcacatctgatggagagaccaacaccgct
actaagatcaacatggatgactactgtggagatgagagtgaagagaagaatccatatcct
gcaaatgattatataggagacgatgatgatgacgagccagagatgccagtgggcccaagg
ccgcggccactctcggacattcagctgaaggagaaggctgttcccatgcctgaggcccgt
gctttctttgtcttcagccacaccaacaaattcagggttttgtgccataagatcgtcaac
cacaacatcttcaccaacctcatcctcttcttcatcctgctcagcagcatcagtctggca
gcagaggatccggtcaagaatgactccttcagaaaccagatcttgggctatgcagatcat
gtcttcactggactcttcaccatagagatcattctcaagatgacagcctatggagccttc
ctccacaaaggttcattctgtagaaactatttcaacatcctggacttggtggtggtcagt
gtgtccctcatctcctctgggatacagtccagtgctattaatgtggtgaaaatcctgaga
gttctgcgagtgctcagaccactaagggccatcaacagagccaaggggctaaagcacgta
gtgcagtgcgtgtttgtggccatcaggaccattggcaatattgtcattgtcaccacgttg
ctccagttcatgttcgcgtgtattggagtacaactctttaagggcaagttcttctcctgc
accgacaactctaaacagactcaggcagagtgcaggggctcctacatcatgtataaggac
agagatgtggggaagcctgaaagagcttcaagagtgtgggagaacagtgaatttaacttt
gacgatgtccttcaaggaatgatggctctgtttgctgtgtctacttttgagggctggcca
gggttactgtaccgggccatagactctcatgctgaggacgttgggcccatctacaactac
cgcgtggttatctccatcttcttcatcatctacatcatcatcattgccttcttcatgatg
aacatctttgttggtttcgtcattgtcacattccaggagcaaggagagcaagaatataag
aactgtgagctggacaagaatcagcgtcagtgtgtggagtatgccttgaaggcccgtcca
ctgcgccgctacatccctaagaacccctaccagtacaaagtgtggtacgtggtcaactcc
acctactttgagtacctgatgttcacactgatccttctcaacaccatctgtctggctatg
cagcatcatggacagaccaaaaatttcaatgatgccatgaacattctcaacatgctcttc
actggactcttcactgtggagatgatccttaaactgattgccttcaaacctagggggtac
tttagtgatccctggaatgtgtttgatttcctcatcgtaattggcagcataatagacgtc
attctcagtgagatcaacccagctgactcgtcctcgtcctcgtcctcctcttcttcgtcc
tcctcctcctcctcttcctcctctcacccccctgtggtaaggccaatggtacgcttcgac
ggtaacctcgtccgcctccctacctccttcaccaaccctccatccctccatccttccatc
ccttcttctgctacgccatccatgggactgcagaactctgaagagaacgccaggatctcc
atcaccttcttccggctgttccgcgtgatgaggctggtgaagctgctgtctcgcggggaa
gggattcggaccctgctgtggaccttcatcaaatccttccaagctctgccctacgtagct
ctgcttatagtgatgctattcttcatatacgctgtcatcggcatgcagatgtttggtaag
atagcgctgcgggaccagacacagatcaacaggaacaacaatttccagacgttccctcag
gcagtactgctgctcttcagatgtgcaacaggtgaggcgtggcaggagatcatgctggcg
tgctcagccaatcggccatgtgagaagggatcgaccaatgagaacagcacatccaacgag
gaatgtggcagccagtttgccatcatttactttgttagcttctacatgctctgtgccttt
ctgatcatcaacctgtttgtggctgtcatcatggataactttgactacctgacacgtgac
tggtcgatcctggggccgcatcatcttgacgaattcaagaggatctgggctgaatatgac
ccagaagctaaggggagaataaagcaccttgatgtggtgactctgctccggaggattcag
cctcccctcggctttggaaagctttgcccccacagggtggcctgcaagcgtctggtgtca
atgaatatgcctctgaacagcgatggaacagtgatgttcaatgccacactgtttgccctg
gtcagaaccgcactcaggattaagacagaaggtaacctggagcaggccaatgaagaactg
agggcaatagtgaagaagatctggaagaggaccagcatgaagctcttggatcaagtagtg
ccccctgctggcgatgatgaggtaacagttgggaagttctacgctaccttcctcatccaa
gaatatttccgcaagtttaagaagaggaaagaacaagggctggtggccaaggtgcccccc
aaaactgccctctctctgcaggcgggcctgcggacattgcatgatattggtccagagata
cggagggccatctctggagacctgacagtggaagaggaactggataaaggcctgaaggag
cctgtgtcggcagcatccgaggacgatatcttcagggtaaagcgtacgggtgggttgttt
ggcaaccatgtcaactactacaaccagagtgatggccgcgggtctttcccacagtctttc
actacccagcgtcccttgcatatcagccagaagggctcaccttgcgaaggagagagccca
tcccacgagaagctcatggactcaaccactttcaccccttcctcatactcctcatcaggc
tccaatgcaaacatcaacaatgctaacaacactggcatggctggggtagcaacccagggt
atcagtcgattcccaagcccatctataagcactgtggatgggcacacagggcagccactc
acccccatcctgctgccaagatctgcgtggtgctttcctcctaagaggacgtgtttttat
gacaacctcatgcgctcggactcaagtgatagtcatctgccaatcatacgaagaggggag
gggtcaacagaggagacctacgatgagagctatggcgacgacagggagtaccatgaggac
gaccactcactctcctctgacatgctagtgtatcatgatgaaacatgtaagcagttggct
cccatggaggaaggagagcaggatgatgacagaagaggaggaggagggtggcagtctccc
aggagagtttttctctgccccacttctctggggcggagatcatccttccatcttgagtgt
ctcaggagacagtcaaggccagatgtctcccagaagacggctgtacccttacaccttgta
catcatcaggctttggcagtggcagggttgagtcctctgctaaggaggagtcactcacct
accctcttcagccggctgtgctccacacctccagccagtcccacagcccatggcagtgat
gcctcctaccagcgagtaccctctctgaggctagagggctccaactcccttgaaaagctc
aataccagcttgccctctgtcaactgtgggccctggtacagtgacagtaatgggaacagc
cgagggcctagtcccagtcccacccctagtgtgtcggtgtccagtcaaagagcaccacgg
ccggtgtcgctcacagtgccctcgctactgggaaaagactccagctcgctgtgtcacggc
agcgcaggcagtctggtggaggcggtgctaatatcagagggtttgggtcatttcgctcag
gacccatcattcattgaggcaaccaaagccgagttggctgacgcctgcgacatgaccatc
gaagagatggagcacgctgccaacaacattctcaatggcaacaccaccacgaacgccacg
tccagcacctcctccacctcccagcacagccctaacggcaacctcctcccattccacaca
gcagcagcagcagcaacgcacagggaccgagtggtcagcttgagtcccagcgagggcggg
ggagaggctggaggaagcagaggctccgtccacgggccgtcctcggtggaggagcggcag
gagctgctagcaggggggagaggacaagaagaggaggaggaagaggcaggagaaagagag
gaggggcaccatagaagctcaggtgtgagtggagcagcgcggcagaggaacagcgggctg
ttggaggatgaggatatggagtgtgtgacaagtttgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (16)   
   RefSeq(pep) (16)   
DNA sequence (20)   
   RefSeq(nuc) (16)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (91)   

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