KEGG   Lates calcarifer (barramundi perch): 108881565
Entry
108881565         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1b
  KO
K09299  zinc finger homeobox protein 1
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lcf03000]
    108881565
Transcription factors [BR:lcf03000]
 Eukaryotic type
  Helix-turn-helix
   Homeo domain ZF
    108881565
SSDB
Motif
Pfam: zf-C2H2 zf-H2C2_2 zf-C2H2_4 zf-C2H2_jaz zf-Di19 Homeodomain zf-met zf-H2C2_5 zf-C2H2_6
Other DBs
NCBI-GeneID: 108881565
NCBI-ProteinID: XP_018529156
Position
LG24:3707382..3754739
AA seq 1106 aa
MADGPRCKRRKQANPRRNNVTNYNNVVEAGSDSDDEDKLHIVEEEGSLADGADCDSTLPD
DEHPREHCWDGGKEDCVSDGEDDVSTDALVEEMLQQGDTAVIYPEAPEDEPQRQGTPDAS
VHDENGTPDSFSQLLTCPYCARGYKRYSSLKEHIKYRHEKTEESFSCPECSYSFAYRAQL
ERHMTVHKAGRDQRHITQTGGNRKFKCTECGKAFKYKHHLKEHLRIHSGEKPYECSNCKK
RFSHSGSYSSHISSKKCISVISVNGRPRLGNAKTQTQGPSPVLSTPPSVLRTQIREKLEH
SKPLQEQLPLNQIKTEPVDYEYKPTVITSPAVTAMNGGVFNGGAAAPLQGTVQAVVLPTV
GLVSPISINLADLQNALKVAVDGNVIRQVLENNAKGQGQVNSGLTTGTLHPPQQQLISAI
SLPIVGQDGNAKIIINYSLDQGQLTAQNLKKEPEPVSPAQTTTDTFKSQKLPEDLTIRGT
RSNETKEKEEKTTKTCLLCDNCPGGLEALHALKHCKKDGLRLNGAGLDKSESAVAALLSE
GGLCSQPKNLLSLLKAYFALNAEPTKDELAKISDSVSLPIHVVKKWFDKMQEGQISLGAP
TPPSEEEDTCEANSVVSLVPGKDTSTMSPSVTQDSPTEATPAEINGAHSSPAPPSPLNLT
AGGPVPAQPPQSTEGPLDLSLPKPCREEAERVVAKASVYPSPSSCSTNEDEPLNLTCTKK
EASPLSVMSTSPVALYASQPSAKPLDIVATMQCLRALATNNKQTILIPQLAYTYTTTANS
PAGTEMHETIHLNGVKEEKQDTGSEGVSTVEEQNDSDSGPPRKKMKKTDSGMYACDLCDK
IFQKSSSLLRHKYEHTGKRPHECGICSKAFKHKHHLIEHMRLHSGEKPYQCDKCGKRFSH
SGSYSQHMNHRYSYCKKETQNQGEGRESPEEDAEAQAEMEALSRAQRQHLVPSQLDLDER
GSSTREDESEEEEEEEEEGVVDMNDIQVVQIGDEGGDEEEEEEEQGDRNEEGMERVMVEG
GGEEKTEIEMKSDEEEADTRQEEVLGSLQEEEDVKMEEDGAMDTEGGVTEEEKAEGEVTE
ESGGETNRNMVSEDENQTPQEKGDTD
NT seq 3321 nt   +upstreamnt  +downstreamnt
atggcggatggccccaggtgtaagcgcagaaagcaggcgaacccgaggaggaacaacgtg
actaactacaataatgtggtggaagccggctcagattcagatgatgaggacaagctgcac
attgtggaggaggaaggcagcctggcggatggggcagactgcgacagcaccctgccagac
gacgagcaccccagggagcactgctgggacggagggaaggaggattgtgtgtcagacggt
gaggatgatgtgagcacagatgccctggtggaagagatgctccagcaaggagacacagcc
gttatctacccagaggccccagaggacgagccacagcggcagggcacccctgatgccagc
gtccatgacgagaacggaactcccgattccttctctcagctgctcacctgcccgtactgc
gctcgtggctacaagcgttacagctctctgaaggagcacatcaagtaccggcacgagaag
actgaagagagcttcagctgtcccgagtgcagctacagctttgcataccgcgctcaactg
gagaggcatatgacagtccacaaggctggacgggatcagagacacatcacacagacaggc
ggcaatcgtaaattcaagtgcactgaatgtggcaaagcatttaaatacaagcaccatctg
aaggagcacctacgcatccacagcggagagaaaccctatgagtgctccaactgcaagaag
cggttctcccactcaggttcatacagctctcacatcagtagtaagaagtgcatcagcgtc
atctcagttaacggcagaccacgcttggggaacgccaaaacccagacccagggtccatca
ccagtgctgtccacaccaccatcagtcctccgcacccagattagggagaagctggagcac
agcaagcccctgcaggagcagctgcccctcaaccagatcaagactgagcctgtggactac
gagtacaagccgacggtgataacgtccccagctgtgactgccatgaatggtggggttttc
aatggaggcgctgcggctcctctgcagggcacagtgcaggccgtggtcctgcccactgtg
gggctggtgtcacccatcagcatcaacctggcagacctgcagaatgctctcaaagtggca
gtggacggtaatgtcattcgtcaggtgctggaaaacaatgccaaaggccaggggcaggtg
aactcggggttaaccactggaacgctccaccctccgcagcagcaactcatctcagccatc
agtctgcctattgtgggtcaggatggaaatgcaaaaatcattataaactacagtttagac
cagggccagctcacagcccaaaacctgaagaaagagcctgagccagtctcaccagctcag
accaccactgacaccttcaagtcccagaaactcccagaagatcttacaatcagaggcacc
aggtccaatgagactaaagaaaaagaggaaaagaccactaagacttgtctcctgtgtgat
aactgtcctggtgggctggaagcactccatgccctcaagcactgcaagaaggatggtctc
aggctaaatggagcaggcctggataagtctgagtctgctgttgctgccctgctgtcagaa
ggaggactctgcagccagcccaagaacctcttgtccctgctcaaggcctactttgcctta
aatgcagagcccaccaaggatgagctggccaagatctctgactcagtcagcctgccaatc
catgtggttaagaagtggtttgacaaaatgcaggagggtcagatatcactgggtgcccca
acacctccttcagaggaagaggacacctgtgaagccaacagtgtggtgtctctggtccca
gggaaggacacatccactatgagcccctctgtcacgcaggacagccctacggaagctacc
ccagcagagatcaatggtgctcacagctcgccggcccccccctcgccactaaacctgaca
gctggtggtccggtgccagcccagccaccccagagcactgagggacccctagacctgtcg
ctgccaaagccctgcagagaggaagcggagagagtggtggctaaagccagcgtttacccc
tccccctcctcttgctcaaccaatgaggatgaacccctaaacttaacttgcacaaagaaa
gaggcatcaccactctcagtcatgagcaccagccccgtcgcactgtacgccagccagcca
agtgccaaacccctcgacattgtggccacaatgcaatgcctaagggctctagccaccaac
aacaaacagactatcctgatcccccagctggcttacacctataccactacagcaaacagc
cctgcagggaccgagatgcatgaaaccatccacctcaacggagtgaaggaggagaaacag
gacacaggctcagagggcgtgtctactgtggaggagcagaatgactcagactcaggccct
ccgaggaagaagatgaagaagacggacagcggcatgtacgcctgtgacctgtgcgacaag
atcttccagaagagcagctcgctgctgagacacaaatacgaacacacagggaagcgacct
cacgagtgcggcatctgcagcaaggccttcaaacacaaacaccacttgatcgaacacatg
cggcttcactcgggggagaagccgtaccagtgtgacaagtgcggcaagcgcttctcccac
tcaggctcctactcccagcacatgaaccaccgctactcctactgcaagaaggagacgcag
aatcaaggagaaggccgggagagcccagaggaggacgccgaggcccaggctgagatggag
gccctgagccgggcacagaggcagcacctggtcccttcccagctggatttggatgagcga
ggaagcagcacaagggaggatgagagcgaggaagaggaggaggaggaggaggaaggagtg
gtggacatgaacgacatccaggtggtgcagataggggacgaagggggggatgaggaggaa
gaggaagaagagcaaggggacaggaatgaggaggggatggagagagtgatggtggaaggg
ggaggagaggagaaaacagagatagaaatgaaatcggacgaagaggaggccgacacaaga
caggaggaggtgctcgggagccttcaagaagaggaggatgtcaagatggaggaagatggg
gcgatggatacagagggaggggtgacggaagaggagaaagcagagggggaggtcacagag
gagagcggaggtgaaacaaacaggaacatggtttctgaagatgagaaccagacgccacag
gagaaaggagatactgactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (43)   

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