KEGG   Lates calcarifer (barramundi perch): 108882511
Entry
108882511         CDS       T04895                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108882511
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcf03021]
    108882511
   03036 Chromosome and associated proteins [BR:lcf03036]
    108882511
Transcription machinery [BR:lcf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108882511
   Coactivators
    SAGA/TFTC/STAGA complex
     108882511
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108882511
    STAGA complex
     108882511
    TFTC complex
     108882511
    SAGA complex
     108882511
    SLIK complex
     108882511
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 RMC1_N WD40_like Nbas_N PROPPIN
Other DBs
NCBI-GeneID: 108882511
NCBI-ProteinID: XP_018530561
UniProt: A0A4W6G780
Position
LG5:complement(1915100..1919701)
AA seq 600 aa
MKRVRTEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPLQYEAQYSRLRSFLSETEISWAKEVSSILYPLFVYLHLDMVRSGLKGAVDGFYS
RFHGAFLQDGEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYGAASGATAAPNSTSSWAGVDGAEGGEGVEVP
AGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFHHTEQMLNTAEVSADSRLLAAGFDS
STVKLWSLRARKLKARPHQADVSRIHLACDVLEEEVDEEDVSGSEIKTLRGHSGPVFRTS
FLTDSSGLLSCSEDTTVRYWDLGSFTNTALYRGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYSLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHGGTPADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKAEQ
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgcactgagcagatccagtacgccgtggctcagtacctgaagaggagg
cagtatgtggacacggacgggtccctgaaaggagccaaactcttccagtcagcggaggag
atggctgccagcctcacagtgcagacagagtcgggttgtgccaacatcgtctctgctgcc
ccctgtcagtctgacccgctgcagtatgaggctcagtactcgaggctgcgctccttcctc
tcagaaacagagatatcctgggcgaaggaggtgagcagcatcctctacccgctcttcgtc
tacctccacctggacatggtgcgctctggcctgaagggggcggtggatggtttttacagt
cgtttccacggcgcctttctccaggacggcgagcagcgagccaccatcgagcagctccgc
cacgtgctcaccgctcaggatgtcgcagccaaccccaagctgagcgccttcttggagcac
aagtacgtggttcacctgacggagccggcctacagctacctgctgcgttacctgcagagc
gaggacaacagcgccctctgcagggccctcagcacgcacctgcaggtggaggtcaccgcc
tcccgacgcacagactaccagctgtacggagcagcgagcggggcaactgccgccccaaac
tccacctcctcctgggcgggagtggacggggcggagggcggggagggcgtggaggtgcct
gcggggatcccacagagcgaggcggccctggaggctctgcaggactgcatcaagaaagtc
cgcgagggccccccctcgctcaccacggtgtgtttttacgccttccaccacacggagcag
atgctgaacaccgccgaggtgtcggccgacagccggctgctggccgccggcttcgacagc
tccacggtgaagctgtggagcctccgagccagaaagctgaaggccagaccgcatcaggcc
gacgtgtcgcgcatccacctggcctgtgacgtcctggaggaggaggtggacgaggaggac
gtctccggcagcgagataaagacgctgcgaggtcacagtggccccgtgtttcgtacgtcc
ttcctgaccgacagctcgggcctgctctcctgctccgaggacaccaccgtccggtactgg
gacctgggcagcttcaccaacacggcgctgtaccggggccacgcctacccggtgtgggac
gtggacgtcagcccctgcagcctttacttcgccagcggctcccacgaccgcaccgcccgc
ctctggacgttctcccgcacctactcgctgcggctctacgccggacacctcgccgacgtc
gactgcgtcaagttccacccgaactccaactacctggccaccggctccacagacaagact
gtccggctgtggagcacccagcagggggcgtctgtccgcctgttcaccggccaccgcggc
cccgtgctgtcgctcgctttctcacctaacgggaagtacctggcgtccgccggcgaggac
cagcgggtgaagctgtgggacctggcatcagggacgttgttcaaagacttgcggggacac
acggacagcgtcaccagcctgtccttcagcccggacagcagcctggtggcgtcctcatct
atggacaactcagtccgggtgtgggacatccgcaactcccacggcgggacgccggccgac
ggctcgtccagcgaactggtgggactgtacactggaaacaccagcaacgtgctgaacgtc
cagttcatggcgtgcaacctgctgctggtgacgggaacggcacaagagaaagcagaacag
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system