KEGG   Lates calcarifer (barramundi perch): 108886906
Entry
108886906         CDS       T04895                                 
Name
(RefSeq) alsin isoform X1
  KO
K04575  amyotrophic lateral sclerosis 2 protein
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lcf03036]
    108886906
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Centrosome formation proteins
   Other centriole associated proteins
    108886906
SSDB
Motif
Pfam: RCC1 RCC1_2 MORN VPS9 PH RhoGEF PH_16
Other DBs
NCBI-GeneID: 108886906
NCBI-ProteinID: XP_018537543
Position
LG1:12511881..12535482
AA seq 1660 aa
MENREESPANEQAATPPERGLLHIWQSAGPSDQFCPERVLLSRPVLQATLGEHHGLLLTQ
GGQVYSFGELLWRDLSIPVSAPVLEVSLLGKTVVRVAAGGFHCGALSEQGSVYMWGENTA
GQCGLTEKGTVTNITVSEPCPVSVVDSEVVPPAVVRVVDLACGREHSLALSSQNELWAWG
SGCQLGLVTNTFPVWRPQKVEHLAGRHVIQVACGAYHSLALVRSLPPQNYSTQNTPEKRE
RGQSPHYTVTEREDTVDDAHYCPLGVELSEVLTGETSPRRRGPRRRLQRGGRSAGSSPGS
GAGSCPFSEEGRSTTKQKNLPVGADLEPDEETNHLTQVDGSPKSHPLSGWRASKNSAFSD
EVELQNLLQKLSGHSLEMQNTSGPGDTDSLSSHTSDDSCVSSTPSMDLFTSSYKEESSLN
SQTTNNSGVSGPYSSSPVCLEEVRLCLETEKKALQGQKSSSLTNINQKGNTAVNRRRSLP
GTPTHGSPRRRRPCACRPSSAGRTQASAPEEAGDRLPSLGTEVWSWGRGSEGQLGHGDQL
ARLQPLCIKSLTGEEVIKVAAGSHHSLALSAQCQVFSWGSNMCGQLGHVNSPVTIPQQAK
LSEGLRVWDVSAGQSHSLLLADGDCIQPILLYCGQHQEPMSAQSERSHQNQRSYQRSPNR
AESYTVRPTLLPLCMEMGYISSVCSGGQSCAVLADQNVMGFISAIHELASRERHFYCWLS
SVRKLLLTPLRNREGVCPLLGEPCTHLFFSLCESFVHLSTLIGRHSTCLSYFLHDVQSRD
VTSLPLLTHTEHFLDIYKEYFSALGHFQVMGGFQSLHKLSLECLGSQQTTLAQLCVSDQS
GSGELDLVSLLYWPLQQLHHYSRILLKLAACYDVLTIEYQSLHQGCIQFESLSLSLLRRK
KEAETTFLFWKTHCGKHTEVLRLPQRRVVCESSNRSLTLQNAGRFSNHWFILFNDALVHT
QGAIPSQSFFSSHHVYPLTCLWVKPVTEDSSGLYAIKITCPEESFTLVASTPQEKNKWLR
SLNQAVDQVLGGGGQGSSPGMTAMSRTASYTFTGEGRFKDAQYTGGWLAGRVHGRGTMKW
PDGRTYTGNFKNGLEDGYGECIIPNKVLNKPDTYQGHWKDGKIHGFGKYKYASGEVYEGC
FCDGQRHGYGMLSSGKQARTSSSVFIGQWVQDRKTGYGVYDDITKGEKYMGLWLDDQRNG
SAVVVTQYGVYYEGTFKENKMSGPGLLVSDDDTAFHGEFSDDWTVNGKGVLSLANGDCLE
GLFSGEWSTGLKVVGTYTKPAIDEPDNKERSSLFRLGQHVVPAGQRWACVFNECWSRLGC
EAAGRGERIAAWENIAVTITTARRHSPDLSRSQTKVLECLEFIPQHGEPVTTANYDNIRR
YLTKACETPLHPLGWLVETLVTVYRMTYVGVGSNRRLLRQAVQEVQAYLTHYYSIVRFLF
PGLPDDGGIIPDPPTSPSKSRHNSNTTEQGVVVVSCSSLLLPLLLPRLYPPLFTLYCLQE
EQEEAQYWERILRLNKQPDQALLSFLGVQEKFWPVWMSILGEKKQIVSSSKDACFVSAVE
TLQQISTTFTPSDKLLVIQKTFEELTQEVKPMLDSDFLWCMDDLLPLFLYVVLRARIRNL
GAEVSLIEDLMDPNVQYGEMGLMFTTLKACYIQTQHESTM
NT seq 4983 nt   +upstreamnt  +downstreamnt
atggaaaacagagaggaaagccctgccaatgagcaggccgccacacctcccgagcgagga
cttctccacatctggcagtcagcgggccccagtgaccagttctgtccagagagagtgctg
ctttccagacctgttctgcaggccaccctgggagaacatcatgggctcctgcttacacag
ggtggtcaggtgtattcgttcggagagctgttgtggagggatctgagcatcccagtgtct
gctcccgtgctagaggtgtctctgctggggaagacagtggtccgtgtggctgccggcggc
ttccactgtggagcgctgagtgagcagggcagcgtctacatgtggggagagaacactgca
ggacagtgtgggctgactgagaagggcacagtcacaaacatcacagtttcagagccgtgc
ccggtcagtgttgtggacagtgaggtcgttcctccagcagtggttcgggttgtggatctg
gcctgtggacgggagcacagtctggctctgtcttcccagaatgagctgtgggcctggggc
agtggctgccagcttggcctggtcacaaacacgttccctgtgtggagaccacagaaggtg
gagcacttggctggcagacatgtgattcaggttgcttgtggcgcctaccacagcctagcc
ctggtgcgcagtttacctcctcagaactacagtacccagaacacccctgagaagagggag
cggggccagtcacctcactacacagtgacagagagggaggatacagttgatgatgctcac
tactgtccgctgggggtggagctgtctgaagtcttgacaggcgagacctctcccaggaga
agaggccctagacgaaggctccaacgtgggggaaggtcagctggcagcagccctggctct
ggagctggctcatgcccgttttctgaggagggcagatctaccactaaacagaagaatctc
ccagttggcgccgatctcgagcctgacgaggagactaaccatctaactcaggtggatggg
agccccaagtctcacccactgtcaggctggagagccagcaagaactctgctttctctgat
gaggtggagctccagaatctcctccagaaactctctggtcactcattggaaatgcaaaac
acctctggaccaggggatactgactcactgagcagtcacacttcagatgacagctgtgtt
tcctcaactccttccatggatctgttcacttccagttataaggaagaatcatcacttaac
agtcagaccaccaataacagtggagtgtctgggccatactcctcctcccctgtgtgcttg
gaagaggttcgactttgtctggagacagagaagaaggcactgcaggggcagaagagctcc
agtcttacaaatataaaccagaaggggaacacggcagtaaacaggagacgttcactgcct
gggacacccacccatgggtctccacggcgacgacggccttgtgcctgcagaccgtcctct
gctggtcgtacacaggcttcagcaccagaggaggcaggagacaggttgccgtctctgggg
acagaagtgtggagctggggccgtgggtctgaggggcaactaggccatggagatcagctt
gccagactccagcctctgtgtatcaagtctttgacaggcgaggaagtgatcaaagttgct
gcaggatcacaccattcattggccctcagcgctcagtgccaggtgttttcatggggcagc
aacatgtgcgggcagctcggacatgtcaacagccctgtcactattcctcaacaggcgaag
ctgtctgagggtctacgggtttgggacgtgtcggccggtcagagccactccctcctcttg
gctgacggagactgcatccagccgatcctcttgtactgcggccagcatcaagagccaatg
tcggcgcagagtgagaggtcacaccagaatcaaaggtcataccagaggtcacctaacagg
gcggagagttatacagtcagacccaccctgctgccgctatgcatggagatgggttacatt
agcagtgtgtgcagtggtggtcagagctgtgcggtgttggctgaccagaacgtcatgggc
ttcatctcagctatccacgagctggcctccagagagaggcacttctactgctggttgagc
agcgtcaggaagctcctcctcaccccgctacgtaacagagagggcgtgtgcccattgtta
ggtgagccgtgcactcatctcttcttctctctctgcgagagttttgttcatctgagcacc
ttgatcggtcgacactccacgtgcctcagctacttcctgcatgatgtgcagagccgtgat
gtcacttcccttccactgctgacgcacactgagcacttcctggacatttataaagaatat
ttctctgcattaggtcacttccaggtgatgggtggattccagtcactccataaactctca
cttgagtgtttaggctctcagcagaccacgctcgctcagctgtgtgtttcagatcagtct
ggcagtggtgaacttgacctggtttcactgttgtactggcctctgcagcagctccaccac
tacagccgaatcctgctaaaactggcagcctgctatgatgtgttaactatagagtatcag
tccctccatcagggctgtattcagtttgagtccctgtctttgtccctgttgaggaggaag
aaggaggctgagaccacattcctcttctggaagactcactgtggaaaacataccgaggtg
ctgcgtctcccgcagcgtcgtgtagtttgtgaaagcagcaacagatctctgaccctgcag
aacgccgggcggttctccaaccattggttcatactgttcaacgatgcactggtgcacaca
cagggtgccattccctctcagagctttttctcctcacatcatgtctatcctctgacctgt
ctgtgggtgaaaccagtcactgaagacagcagtggactctatgccatcaaaattacatgt
ccagaggagagtttcaccttggtggcttcaacaccacaggagaagaataagtggctacga
tctctgaaccaggcggtggatcaggtgttgggtggcggaggtcaggggtcatcaccgggg
atgacggcgatgtctcgtaccgcctcctacacgttcactggagagggacggtttaaagat
gcccagtacacggggggctggctggcagggcgagttcatggcagaggaaccatgaagtgg
ccagacggacggacgtacactggaaactttaagaacggcctggaggatggctatggggag
tgtataatacccaacaaagtgctgaataaaccagacacctaccagggacactggaaagat
ggcaagatccatggttttggcaagtacaagtatgccagcggtgaggtgtacgagggctgt
ttctgtgatgggcagcggcacggttatggcatgctgagctctggtaaacaggccaggact
tcttccagcgttttcattggtcagtgggtccaggacaggaagacaggatatggagtctac
gatgacattaccaaaggtgagaagtatatgggactgtggctggacgaccagagaaacggc
agcgctgtggtcgtcacccagtacggtgtgtactatgaagggaccttcaaggagaacaag
atgagtggtccagggctgctggtgtcagatgacgacacagctttccatggggagttttct
gatgactggactgtcaacgggaagggtgttttgtccctggccaacggtgattgtttagag
ggtctgttcagtggagagtggagcacagggctgaaagtggttgggacgtacaccaaacca
gctattgatgaacctgacaacaaagagagaagcagtctgttcaggttgggtcagcatgtg
gtgcctgcaggtcagaggtgggcctgcgtgtttaatgaatgttggagtcgactgggctgt
gaagcagctgggaggggagagaggatcgcagcctgggagaacatcgctgtgactataaca
accgcacgacgacacagcccagacctcagtaggtctcagaccaaagtcctggagtgtttg
gagtttattcctcagcatggagaacctgtcaccactgcaaactacgacaacatacgaaga
tatctcaccaaggcatgtgagactcccctccaccctctgggctggctggtggagacgttg
gtgacagtctacaggatgacgtacgtcggtgtgggatccaaccgcaggctgctcaggcag
gctgtccaggaggtccaggcttacctcacacattactacagcatcgtcagatttctgttt
ccggggttaccagatgatggtggcattatcccagaccctcccacctctccatccaaaagc
agacacaactctaacacaacagaacaaggtgttgtagtggtgagctgttcctcactgctt
ctccctctgctgctccctcgactctaccctcctctcttcacgctgtactgcctgcaggag
gagcaggaggaggcccagtactgggagcgcatcctccgactcaacaaacagcccgaccag
gcgctgctcagcttcctgggagtgcaggagaagttctggccagtgtggatgtcaatatta
ggagagaaaaagcagattgtgtccagcagtaaagatgcctgctttgtttctgctgtggag
acactccaacaaattagcaccaccttcaccccatcagataaactcctggtcatccagaaa
acatttgaggagttgacacaggaagtaaaacctatgctggatagtgatttcctttggtgc
atggatgacctgctccctctcttcctctatgtggttctcagagccaggatcaggaacctg
ggagctgaggtcagtctgatagaagatctgatggatcccaacgttcagtacggagagatg
ggactcatgttcacaacactgaaggcctgctatatccagacccagcatgagtcgactatg
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (82)   

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