KEGG   Lates calcarifer (barramundi perch): 108887178
Entry
108887178         CDS       T04895                                 
Name
(RefSeq) platelet-derived growth factor subunit A isoform X1
  KO
K04359  platelet-derived growth factor subunit A
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04010  MAPK signaling pathway
lcf04020  Calcium signaling pathway
lcf04510  Focal adhesion
lcf04540  Gap junction
lcf04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    108887178
   04020 Calcium signaling pathway
    108887178
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108887178
   04540 Gap junction
    108887178
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    108887178
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:lcf04052]
    108887178
   00536 Glycosaminoglycan binding proteins [BR:lcf00536]
    108887178
Cytokines and neuropeptides [BR:lcf04052]
 Cytokines
  Growth factors (RTK binding)
   108887178
Glycosaminoglycan binding proteins [BR:lcf00536]
 Heparan sulfate / Heparin
  Growth factors/receptors
   108887178
SSDB
Motif
Pfam: PDGF_N PDGF TraY
Other DBs
NCBI-GeneID: 108887178
NCBI-ProteinID: XP_018537967
Position
LG5:4416645..4464906
AA seq 242 aa
MNNMNLTTKSHFSLKAGGSTGPRERQAMEERGKKRGEQNEWDASEEKLLPGGSDSVTARV
SPFKESPLPRELLERLSRSDIRSISDLQRLLEIDSVENEVIVETKHSYHKDFSHSFPDLK
RAHTHTRHRRSTVVEEALPAVCKVRTTIYEIPRSQVDPTSANFIIWPPCVEVKRCTGCCN
TSNMRCQAARKHHRMVKVAKVEYVRRRPKLKEVQVRLEDHLECMCTSKRHISPNSDTDNG
IR
NT seq 729 nt   +upstreamnt  +downstreamnt
atgaacaacatgaatctgacaaccaagtcacacttcagcttaaaggcagggggctcgact
ggccccagagaaagacaagcaatggaagagaggggaaaaaaaagaggagaacagaacgag
tgggatgcatcagaggagaagctgctgccaggaggaagtgacagcgtcacggcacgagtg
tcgccattcaaggagtcccccctcccacgggagctgttggagcggctctcccgcagcgac
atccgcagcatcagcgacctccagcggctgctagagatagactccgtagagaacgaggtg
atcgtagagaccaaacacagctaccacaaggacttctctcacagcttccccgacctgaag
agagcacacacacacaccagacacaggaggagcactgtggtggaagaggccttgccagcg
gtgtgtaaggtgcggacaacgatctatgagatccccaggagccaggtggaccccacctcg
gccaacttcatcatctggccgccgtgcgtcgaggtgaaacgctgcactggctgctgcaac
accagcaacatgaggtgccaggcagcccgcaagcaccaccgcatggtcaaggtggcgaag
gtggagtacgtgcggcggcggcccaagctgaaggaggtgcaggtgaggctggaggatcac
ctggagtgcatgtgcactagcaaacgccacatcagcccaaactcagacacggataatggc
atcaggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (38)   

Download RDF
DBGET integrated database retrieval system