KEGG   Lates calcarifer (barramundi perch): 108890440Help
Entry
108890440         CDS       T04895                                 

Definition
(RefSeq) heat shock cognate 71 kDa protein-like
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03040  Spliceosome
lcf04010  MAPK signaling pathway
lcf04141  Protein processing in endoplasmic reticulum
lcf04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108890440
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108890440
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    108890440
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    108890440
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lcf01009]
    108890440
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcf03041]
    108890440
   03009 Ribosome biogenesis [BR:lcf03009]
    108890440
   03110 Chaperones and folding catalysts [BR:lcf03110]
    108890440
   04131 Membrane trafficking [BR:lcf04131]
    108890440
   03051 Proteasome [BR:lcf03051]
    108890440
   03029 Mitochondrial biogenesis [BR:lcf03029]
    108890440
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108890440
Protein phosphatases and associated proteins [BR:lcf01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     108890440
Spliceosome [BR:lcf03041]
 Complex B
  Other components
   Prp19 complex
    108890440
 Complex C
   Prp19-CDC5 complex
    108890440
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    108890440
Chaperones and folding catalysts [BR:lcf03110]
 Heat shock proteins
  HSP70 / DNAK
   108890440
Membrane trafficking [BR:lcf04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    108890440
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    108890440
Proteasome [BR:lcf03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    108890440
Mitochondrial biogenesis [BR:lcf03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    108890440
Exosome [BR:lcf04147]
 Exosomal proteins
  Proteins found in most exosomes
   108890440
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl FGGY_C CRIC_ras_sig Ppx-GppA DDR
Motif
Other DBs
NCBI-GeneID: 108890440
NCBI-ProteinID: XP_018542824
Position
Unknown
AA seq 645 aa AA seqDB search
MSKGPAVGIDLGTTYSCVGIFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA
MNPANTVFDAKRLIGRKFDDPVVQSDMKHWPFKVVNDSSKPKVEVEYKGEMKTFYAEEIS
SMVLTKMKEISEAYLGKPVTNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAA
IAYGLDKKVGSERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH
FIAEFKRKFKKEINNNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGTDFYTSITRA
RFEELNADLFRGTLEPVEKALRDAKMDKTQIHDIVLVGGSTRIPKIQKLLQDFFNGRDLN
KSINPDEAVAYGAAVQAAILAGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTI
PTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNILGKFELTGIPPAPRGVPQIEVTFDI
DANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEQFRAEDEVQRDKVAAKN
SLESLAFNMKSTVEDEKLQDKISPEDKKTIVDKCNEVIAWLDRNQMAEKEEYDHQQKELE
KVCNPIITKLYQGGMPGGMPGGMPGGFPGGAGGGSSSGPTIEEVD
NT seq 1938 nt NT seq  +upstreamnt  +downstreamnt
atgtctaaaggaccagcagtaggcattgatctgggaaccacatattcctgtgtgggcatc
ttccaacatggcaaagtggagatcatagctaatgaccaaggaaacaggaccacgcccagc
tatgtggccttcacagacacagagagactgattggagatgctgccaagaaccaggtggcc
atgaacccagccaacactgtatttgatgctaagcgcctgattggccgtaagtttgacgac
ccagtggtgcagtcagacatgaagcactggcccttcaaggttgtgaatgattcatccaaa
cccaaggtggaggtggaatacaagggtgagatgaagaccttctatgctgaggagatttcc
tcaatggtccttaccaagatgaaagagatttctgaagcttatcttggcaagcctgtcacg
aatgcagttattacagttcctgcttacttcaatgactcccagcgtcaggccaccaaagat
gctggagccattgctgggcttaatgtgctgcgcatcatcaatgagcccactgctgctgcc
attgcttatggcctggacaaaaaggttggcagcgaacgaaatgtccttatctttgacctt
ggaggtggcacatttgatgtgtccatcctgactattgaggatggcatctttgaggtcaag
tccacagcaggtgacactcacctgggtggtgaggactttgacaaccgcatggttaaccac
ttcattgctgagttcaagcgcaagttcaaaaaggaaatcaacaacaacaagcgagccgtg
cgtcgtctacgcacagcatgtgagcgtgctaagcgcaccctctccagcagtacccaggcc
agtattgagatcgattcactctatgaaggaacagatttctacacttccatcaccagggct
cgttttgaagagctgaatgcggacctgttccgtggaaccctcgagcctgtggagaaggcc
ctgagggatgccaagatggacaagacccagatccatgacattgtcctggttggtggctcc
acacgtatccccaagattcagaagctgttgcaggacttcttcaacggtcgcgatctcaat
aagagcatcaaccctgatgaggctgtggcctatggtgcagctgtgcaggctgccatcttg
gctggtgataagtctgagaatgtacaggacctgctcctgctggatgtaacccccctgtcc
ctgggaattgagaccgctggaggagtaatgactgtccttatcaaaaggaacaccaccatc
cccaccaagcaaacccagacctttaccacctattcagacaaccaacctggtgtgcttatt
caggtttatgaaggtgagagagccatgaccaaggataataatatcctgggcaagtttgag
ctgactggtattccacctgctcccagaggggtccctcagattgaggtgacctttgacatt
gatgccaatggcattctcaacgtctctgcagtggacaaaagcactggaaaggagaacaag
atcaccatcactaatgacaaagggcgactgagcaaggaggacattgagcgcatggtacag
gaggcagagcagttcagggctgaggacgaagtccagagagacaaggttgcagccaagaat
tccctcgagtctctggccttcaacatgaagagcacggtggaggacgagaagctccaagac
aagattagccctgaggacaaaaagaccattgtggacaagtgcaacgaggttattgcctgg
ctggacaggaaccagatggcagagaaggaggagtacgatcaccagcagaaggaactagag
aaagtgtgcaaccccatcatcacaaagctataccaggggggtatgccaggagggatgcca
ggaggaatgcctggtggtttccctggtggagctggaggtggctcctcctctggcccaact
attgaggaggtcgactga

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