KEGG   Lates calcarifer (barramundi perch): 108893516
Entry
108893516         CDS       T04895                                 
Symbol
irf1b
Name
(RefSeq) interferon regulatory factor 1b isoform X1
  KO
K09444  interferon regulatory factor 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04625  C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09150 Organismal Systems
  09151 Immune system
   04625 C-type lectin receptor signaling pathway
    108893516 (irf1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lcf03000]
    108893516 (irf1b)
Transcription factors [BR:lcf03000]
 Eukaryotic type
  Helix-turn-helix
   Tryptophan clusters interferon-regulating factors
    108893516 (irf1b)
SSDB
Motif
Pfam: IRF
Other DBs
NCBI-GeneID: 108893516
NCBI-ProteinID: XP_018547125
UniProt: A0A4W6E965
Position
LG20:16774521..17097727
AA seq 290 aa
MPVSRMRMRPWLERMIDSNTISGLAWVDKDKTMFSIPWKHAARHGWEMDKDACLFKQWAI
HTGKYVEGQTSDPKTWKANFRCAMNSLPDIEEVKDRSINKGHQAMRVFRMLPATPKSRDK
RSKAKEAKQRNKGPVVKMEEDTDSSDTQSTLSEEILSTQENRVDSTVHTDQQDFPLIAYS
DVPDYSSSVEIENDNFSAFCQRFEVSPDHSPEYDDIIEICQQLEKETHWLSSSLDGTGFL
SNEACTSPGSQWSDSSSADELDELPQYTTLVSDFTSHTDNLWKPFYPPML
NT seq 873 nt   +upstreamnt  +downstreamnt
atgcccgtgtcaaggatgaggatgaggccgtggctggagaggatgatcgactctaacacc
atctctggattggcttgggtggacaaggataagaccatgttctcgattccctggaagcac
gcagctcggcacggctgggagatggacaaggacgcgtgcctgttcaagcagtgggccatc
cacacagggaaatacgtggagggccagacctctgaccccaagacatggaaagccaacttc
cgctgtgcgatgaactcactgcccgacatcgaagaggtgaaagacaggagcatcaacaag
ggccaccaagccatgcgcgtcttcaggatgctgcctgccaccccaaaatctagagataaa
cgaagcaaagcaaaggaggcaaagcaaaggaacaagggcccagtggtaaagatggaggaa
gacacagactccagtgatactcagtccacactgtcagaggagatcctgtctactcaggaa
aacagagtcgacagcacggtgcacacagatcagcaagatttccccttgattgcttattcc
gatgttcctgactattcttcgtcggtggagattgagaatgacaacttttcagccttctgc
cagagatttgaagtttcaccggatcacagccctgagtacgacgacattattgagatttgc
cagcaactggagaaagaaacacactggctgtcaagcagtttagacggcacggggttcctg
agcaatgaagcatgcaccagtccagggagccagtggagtgactcttcctcagccgacgaa
ctagatgaactgccacagtacacaactctggtctcagacttcacaagccacacagacaac
ctctggaaacccttttaccctcccatgctctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

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