KEGG   Lates calcarifer (barramundi perch): 108894761
Entry
108894761         CDS       T04895                                 
Name
(RefSeq) collagen alpha-1(XI) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108894761
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:lcf00536]
    108894761
Glycosaminoglycan binding proteins [BR:lcf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108894761
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 108894761
NCBI-ProteinID: XP_018548881
Position
LG5:5650620..5688353
AA seq 1700 aa
MEGVSLEAGLCTSRKDREETDLSFKIDRKIQLSAPTKQLFPDSPFPTDFSVMTTVRAVKG
SQVFLLSLYDSQGTQQLGVEIGRSPVFLYEDHEGQPPPELYPTFRKINLADGKWHRVAYS
VEGQSVTLYLDCEKQDTLELLRGHDPHVSTEGVTVFGTRLLDEDVFEGDIQQLLIVDDPR
AAETYCQDYIPDCEAPLPYESILTEVEEVERTPKKHMVEEFEEFDYSDLYDDISVSTVDA
STNVTEYEIVEYEDYDNTTDFYHVNEYEYEEEYDERYGPAEREREYSLNAQDVPEKGQKG
EPGILGVGTQITGPHGPPGPEGEPGPPGVTGPVGPRGDPGELGPPGRPGLNGADGIPGPP
GNIMLIPFQSGGDPKTGTVVSAQEAQAQAILQQTKLAMKGPPGPLGLRGRPGPLGAPGPS
GLKGTSGDLGPPGPPGLPGIPGQNGRPGKRGRSGTDGGRGAIGEAGAKGDRGFDGLPGLP
GNKGHKGDRGKPGPVGPSGEPGEKGSEGPPGPRGQPGDAGSRGLNGPRGRPGPPGQSGIR
GIDGVQGSKGNIGPPGDVGAPGQQGNPGIVGFPGPQGLVGLPGDKGPQGKKGMQGLPGND
GPPGHPGREGTPGEKGLPGPPGVQGPVGYPGQRGVKGADGIRGLKGSKGEKGEDGFPGAK
GEMGAKGDVGDNGAPGGRGEDGPEGPKGQMGPQGEPGSSGTPGEKGKLGVPGLPGYPGRQ
GPKGSDGFPGAVGAAGEKGKKGPAGQPGTAGQRGPNGARGARGARGPTGKSGEKGASGHD
GPPGSPGERGPQGPQGRNGEPGPKGSSGPAGKDGLPGHPGQRGEPGFQGKTGPPGPSGVV
GPQGKSGESGPAGDRGHPGAPGVPGEHGLPGAAGKEGGKGDPGLPGTPGKNGPPGLKGFR
GSRGAPGVMGPPGLKGGSGPTGLPGAIGATGERGPPGSAGAIGQPGRAGSIGGPGPMGEK
GEPGDKGPIGPAGQDGDQGPIGMPGATGPAGPPGDDGDKGEQGGPGQKGSKGDKGEAGPP
GPTGTQGPIGQPGLPGLDGLPGPRGQQGMYGPKGDEGLRGFKGSKGPIGLQGMPGLPGEK
GESGHVGLMGPPGQQGPTGPQGPIGGQGPNGRPGMIGQPGIVGEKGEDGEAGDPGPVGVP
GRLGEKGDQGEKGDTGPPGAAGPPGARGPTGEDGAKGNAGPIGLTGDLGQQGEAGPNGVD
GVPGSKGDTGDPGKSGPPGAPGEPGPPGPPGRRGHLGKPGKEGKAGLKGVKGAPGLEGPI
GKTGPVGAQGHPGKPGPQGLRGIPGPAGDQGLNGPPGQTGPPGPMGPPGLPGLKGDPGKK
GDKGHGGLIGLIGPPGDMGEKGDRGLPGNQGLPGPKGDEGLSGPAGPHGPPGPTGLSGAI
GFKGSKGNQGPIGPRGDTGPAGPPGPPGPAAAGMTRLPERGRRRRTHDSVDGAALEQEED
GAIDGGEEEWMQGDQAEQDGWMKEKEGQGMEEVFASLSSMKVEVEGLRNPHGTFHSPART
CKELWLLHPELPNGEYWIDPNQGCHRDSFKVFCNFTAQGETCLYPDKKFQSVKLAAWKGE
KHGTWYSKFRKGKQFSYSGSDGVPVHIVQLNFLKLLSATAKQTFTYHCLNSAAWLHTTTF
GHEHALRFRGSNGEELTHENTHYISALYDGCQTRSGQERTVLEFDAPLSNTLPIIDVAVS
DFGNGNQKFGFQVGPVCFNG
NT seq 5103 nt   +upstreamnt  +downstreamnt
atggagggcgtgtcgctggaggcaggtctgtgcaccagcaggaaggaccgagaagagaca
gacctctcctttaaaatcgacaggaagattcaactgagtgcacccaccaagcaactcttc
cctgattctccattccctacggatttctcagtgatgacaacagttagagctgtgaaaggc
tcacaggtctttctcctctccctgtatgactcgcagggcacgcagcagctgggtgtagag
atcggacgttctcctgtcttcctgtatgaggaccacgagggtcagccacctcctgaactt
taccccacctttagaaagatcaacctggctgatggcaagtggcaccgagtagcctacagt
gtggagggccagtctgtgactctctaccttgactgtgaaaagcaggacaccctggaactg
ctcagaggtcacgaccctcacgtcagcacggagggagttacagtgtttggaactcgcctg
ctggatgaagatgtgtttgaaggagacatccagcagctgctgatcgtcgacgaccccaga
gcagcagagacgtactgtcaggactacatcccagactgtgaagcacctttgccctatgaa
agcatattaacagaggttgaggaggtggagagaacacctaagaaacatatggtcgaggag
tttgaggagtttgactacagcgacctctatgatgacatctctgtctccacggtggacgcg
agtactaatgtcacagagtatgagattgtagagtatgaagactatgacaacactacagat
ttctaccatgtgaatgagtatgaatatgaggaagagtatgatgagcgctatggaccggct
gagagagaacgggagtactctctaaacgcacaggatgtaccggagaaaggacagaaagga
gaaccaggaattttgggagtggggacgcagattacaggaccacatgggcctccaggacct
gagggagaaccggggcctcctggagtcacaggaccagtgggacctcgaggagaccctggg
gagctgggccctccagggcgaccaggccttaatggagctgatgggataccagggccccca
ggaaacatcatgctcataccgttccagtcaggtggtgatccaaaaacagggactgtggtt
tctgcacaggaggcgcaggcccaggccatcctgcagcagaccaagctggctatgaaggga
cctcctggaccgctcggcctcaggggaagacctggaccactgggtgcaccaggtccctct
gggctgaaggggaccagtggagacttggggccaccgggtcctccaggactgccaggtatc
ccaggtcagaatggacgacctgggaaaaggggtcggtcaggtacagatgggggccgtggt
gcaataggagaggctggagcgaagggggatcgagggtttgatggtttacctggtctccct
ggaaacaaaggacataaaggagacagggggaaaccaggccctgtaggtccttcaggagag
ccaggagagaagggctctgaggggccacctggaccaagaggacaaccaggtgatgctggc
tccagaggtttgaatggccccagaggtcgtcctggtcccccaggccagtctggcattcga
ggaattgatggggttcaaggctcaaagggaaacataggaccaccgggtgacgttggagca
cctggacagcaaggcaaccctggaatcgtgggctttcctggtcctcaggggttagtgggg
ctgccaggagataaggggcctcaagggaagaaagggatgcagggcttacctggaaacgac
gggcctccaggtcatcctggaagggaaggtactccaggtgaaaaaggactgccgggtcct
ccaggagttcaggggcctgtcggataccctggacaacgcggagttaagggagcagatgga
atcagaggattaaagggaagcaaaggcgagaagggagaggacggtttcccaggggccaag
ggggagatgggagcaaagggggacgttggagataatggagctccgggtggacgaggagaa
gatgggcctgaggggcccaaaggccagatgggtcctcaaggagaacctggctcttctggt
actcctggagagaaggggaaactgggagttcctgggctgccaggatatccagggcgacag
gggccaaagggttctgatggtttccctggagcagttggagctgcaggagagaaagggaaa
aaaggtcctgcaggacaaccaggaactgcaggccagaggggtccaaatggtgcacgaggt
gccagaggagcaagagggccaacagggaaatcaggagagaagggcgcctcaggacatgac
gggcccccaggatctcctggagagaggggtcctcaagggccgcaaggaaggaacggagag
ccaggacctaaaggatcgagtggtccagctgggaaggatgggcttccaggtcatccaggt
caaagaggagagccgggattccaagggaagacaggacctcctggaccctcaggtgttgtg
gggccacagggcaaatcaggagaatccggcccagcgggggacagaggtcacccaggggca
ccgggggtacctggagagcatggtttacctggggctgctgggaaggaaggtggaaagggt
gatccaggtttacccggcacacctgggaagaacggtcctccagggctgaaagggttcagg
gggagccgtggagcgcctggagttatggggcctcctggtctgaaaggaggatcaggacct
acaggactcccaggagccataggtgcaacaggtgagaggggcccaccaggatcagctggt
gccatcggacagcctggtcgggccggatcaatcggaggaccaggaccaatgggagagaag
ggggaacctggagacaaaggtcctattggaccagcgggtcaggatggagatcagggacct
attggaatgcctggtgctacaggtcctgctggacctccaggagacgacggggataaggga
gagcaaggaggccccgggcagaaaggcagcaaaggagacaaaggagaagctggccctcca
ggccctactggcacacaagggcccatcggtcagccaggacttccaggtttggacggactg
ccaggtccccggggccagcagggcatgtacggcccgaaaggagacgagggactccgtggg
tttaagggctctaaaggaccaataggattacagggcatgccaggcctgccaggagaaaaa
ggcgagagtggacatgtgggattaatgggtccacctgggcaacaaggccccactggccct
caaggacctattgggggacagggtccaaacggtcgaccaggaatgattggacagcccggc
attgttggagagaagggcgaagatggtgaagcaggagaccctggaccagttggtgttcca
ggaaggctaggagaaaaaggagaccagggagaaaagggagatacaggccctccaggagca
gctggtcctccaggagccaggggccccacaggggaggatggagccaaaggcaacgctggt
cctataggcctcactggggacctcggacagcagggggaggctggacctaatggtgtagat
ggtgtgccgggctctaaaggagacactggagatcctggaaaatctggaccacctggagca
ccaggtgaacctggaccacctggacctcctgggcggaggggccacttggggaaaccaggg
aaggaaggaaaggcaggcctaaaaggagtgaagggtgctcccggtttggagggtcccata
gggaaaacagggcctgtgggtgcccaggggcatcctggcaagcctggtccccaaggtcta
agagggattcctggccctgcaggtgaccagggtttgaatggaccacctggccagacagga
ccacctggtcccatgggtccaccaggtttacctggactaaagggagaccctggcaagaag
ggagacaagggtcacggtggtttaataggtctgattgggccaccaggagacatgggagag
aagggagacagaggactgccaggaaaccaaggactaccaggtccaaaaggagatgagggt
ctatctggcccagcaggtccccacggtccccctggccccacaggcctgtctggtgctatt
ggttttaagggctctaaaggaaaccagggtccaattggccccagaggagacactgggcct
gcaggacctccaggaccaccaggaccggcagcagctggaatgacccgtctgccagagcga
ggaaggagaaggagaacccacgactcggtggatggtgctgcacttgaacaggaggaggac
ggggctatagatggaggagaggaggaatggatgcagggggaccaggcagagcaggacggt
tggatgaaggagaaggagggacaaggcatggaggaagtgtttgcgtctctgtcctctatg
aaagtggaggttgagggtctgcgtaacccacatgggacgttccacagcccagcccgtacc
tgcaaggagctgtggcttctccacccagagctccccaacggtgagtactggatagatccc
aaccagggttgccatagagactccttcaaggtgttttgtaacttcactgcacaaggagag
acatgtctgtaccctgacaagaagttccagtcggtgaagctagctgcctggaaaggggaa
aagcacggcacatggtacagtaaattcaggaaaggaaaacagttttcctactctggatca
gatggcgttccagtccacatcgtccagttaaacttcctgaagctgctgagtgcgacagcc
aagcagaccttcacctatcactgcctcaactccgccgcgtggctgcacaccaccaccttc
ggccacgaacacgcactgcgcttcagaggcagcaacggggaggagctgacgcacgagaac
acacattacatcagtgcactgtacgacgggtgtcagacacgctcagggcaggagaggact
gtgttggaatttgacgctccactgtccaacacgctccccatcattgacgtggccgtgtcc
gattttggaaatgggaaccagaaatttggtttccaagttggcccggtctgctttaacggt
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (68)   

Download RDF
DBGET integrated database retrieval system