KEGG   Lates calcarifer (barramundi perch): 108895217
Entry
108895217         CDS       T04895                                 
Name
(RefSeq) TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108895217
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcf03021]
    108895217
   03036 Chromosome and associated proteins [BR:lcf03036]
    108895217
Transcription machinery [BR:lcf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108895217
   Coactivators
    SAGA/TFTC/STAGA complex
     108895217
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108895217
    STAGA complex
     108895217
    TFTC complex
     108895217
    SAGA complex
     108895217
    SLIK complex
     108895217
SSDB
Motif
Pfam: TAF6_C TAF
Other DBs
NCBI-GeneID: 108895217
NCBI-ProteinID: XP_018549390
UniProt: A0A4W6EB50
Position
LG14:757961..766720
AA seq 643 aa
MAEREERRFAEISRESVKLMAESAGVELGDDVAGLLAEDVCYRLREATQSSSQFMRHAKR
RKLTVEDFSRALHWSNVEAICGYGAQDALPFRSVKEGEFFFIEDRDINLVELALATNIPK
GCAETMVRVNVSYLDGKGNLEPQGTVPTAVQSLSDDMLKYYQQITRAILGEDPHLMKVAL
LDLQSNSKIAALLPYFVYVISGVKSVSHDLEQLNRLLHMVKSLVQNPYLYLGSYVRSLVS
SVMYCILEPLAASINPLNDHWTLRDYAALLLSHIFWTHGDLVSGLYHQILLSLQKVLSDP
VRPLCSHYGAVVGLHALGWKAVERVLFPHLPAYWANLQAVLDDYSVSNAQVKADGHKVYG
AILVAVERLLKMKALSLSQPAEGGSSSQTGSVLGAMGYRVSSPGLSPPPEPLSEATLGIA
SHLQAGGAGCPWEEWSPVPLPAMYSELYSFFGDSLAVRFSTGPGFGSYPSCTPSQLSDAR
KEPPGPTSNPDTTRKMPQLTANLNISPRHDGSPRTDPPPPSLAATGSGRSLTRSSSSSAS
VQRSRSSLSRSGQRSAGLSRDVFPKARFTSPQTGPPAFSFLIGGRQMGRRCQGRRPFQTT
FVPTPPLSAIPSRAYAHKLPVIGRVGKPVHRWACSHYSLHLPL
NT seq 1932 nt   +upstreamnt  +downstreamnt
atggcggagcgggaggagcgccgcttcgccgagatttcccgagaatctgtcaaactcatg
gccgagagtgcaggcgtggagctcggcgacgatgtggccggtctgctggctgaggacgtg
tgttaccggctcagggaggcgacacagagcagctcacagttcatgagacatgccaagagg
aggaagctgacagtggaggacttcagcagagctctgcactggagcaatgtggaggccatt
tgtggttatggggcccaggatgctctgccttttcgttcagtgaaagaaggagagtttttc
ttcattgaggatcgagacatcaacctggtggagttggctctggccaccaatattcccaaa
ggctgtgctgagaccatggtacgagtgaacgtgtcatacctggatgggaaaggcaacctg
gagcctcaagggactgttcccacagcagtgcagtctctatcagatgacatgttgaagtac
taccagcagatcacacgggccatactgggagaggacccccacctcatgaaggtagctctg
ctggacctgcagtctaattccaagattgctgccttgctaccttattttgtttatgtcatc
agtggggtgaaatcagttagccatgacctggagcaactcaacagactcctccacatggtg
aaaagcctggtccagaacccctacctgtacctgggctcatatgtccggagcctggtctcc
agcgtcatgtactgcatcttagagccactagctgcttccatcaacccccttaacgaccac
tggaccctcagggactatgctgccctgctcctcagccatatcttctggactcatggtgac
ctggtgagtggtctctaccatcagatcctgctgtcgctccagaaggttctgtctgatcca
gtaaggcctctttgctcccactatggagctgtggtggggcttcacgctctgggatggaaa
gctgttgagagagttctctttccacaccttcctgcctactgggccaacctccaggctgtg
ttagatgactactctgtttccaatgctcaggttaaagcagatggacataaggtctatgga
gccattctggtggcagtagagcgcctgctgaagatgaaggctctgtccctgtctcagcca
gcagagggaggctccagcagtcagacaggctctgtgctgggtgctatgggatacagagtg
agctcccctggcctcagcccccctccagagcctctgtcagaagccactctagggattgcc
agccacctccaggcgggaggggcgggttgtccctgggaggagtggagcccagtccctcta
cccgccatgtacagtgagctctactccttctttggagacagcctggctgtcaggtttagt
actggaccagggtttggcagctacccctcttgcaccccatcccagctcagtgatgccagg
aaggaacctcctggacccacatccaaccctgacaccacccgtaagatgccacagctgact
gccaacctcaacatcagccccaggcatgacgggagccctcgcactgacccacccccaccc
agcctggctgctacagggtcaggaaggtccctgactcgctcctcctcctcctccgcctca
gtgcagcggtccagatcttccttgtcacgctcaggtcagcgctcggcaggtctgtcacgt
gacgttttccccaaagctcgcttcacctctcctcagaccggacccccggcgttctccttt
ctcattggtgggcgacaaatgggccgtcgttgccaaggccgccgcccattccagaccact
tttgtcccaactccacctctctctgccatcccatcacgtgcctacgcccacaaattgcct
gtcattggcagggtgggtaaacctgtgcaccgctgggcatgttcccattactctcttcac
ctgcctttatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (35)   

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