KEGG   Lates calcarifer (barramundi perch): 108897964
Entry
108897964         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108897964
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:lcf00536]
    108897964
Glycosaminoglycan binding proteins [BR:lcf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108897964
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_1
Other DBs
NCBI-GeneID: 108897964
NCBI-ProteinID: XP_050928929
Position
LG9:complement(16639567..16714226)
AA seq 2014 aa
MDTHIRWKVKRRIRDAQITLAVILLFVTSQASSAEPADLLKILDFHSLPEGVTKTTGFCS
HRRSTQGPDVAYRVSKDAQLSAPTKQLYPGDVFPEDFSILATVKPKKGSQSFLLSVYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPSPEDYPLFRGVNLADGKWHRVAISVHKQTITLILDC
KKKTTQKLLRSPSPIIDTKGIIVFGTRILDEEVFEGDIQQLMIVADHRAAYDYCEHYSPD
CEVPVPDQPQNQDPNTDEYNTEEDSYYYEYPYYEDVDGKPYESSPDTETTTEEVKVTGTD
GDKVATTVKEVIRGSGGTSTSISTSSSSGTSSGSSSSSSSSSSSSSSSSSSSSSSGTATG
GGGDAYGEETSPYDSYDAYGNYETYYDESTAAPDGDTSRRVTITSIGTGGELDLGAGAKI
DLGAGTGIERSVITRGSGSTTVSINETAVGGSYDDYGDGYDYGVDSHYTTGGGGSSSRTV
HISGGGGGGSSSSTVHVGGGGGSGGSSSSTVHISGGGGGSSSSSTITIGEGSSVSTSGSS
TAGGGSASAGTGAGGSIATGTGQGVEGEGDYTDLDGFKEEHITDYSDLDLYDTYGELDYD
TDRKPLPAETDEYYGQVDGARGEKGQKGEPAVIEPGMLVEGPPGPEGPTGLPGPPGASGP
PGSPGDPGERGPPGRSGLPGADGLPGPPGTVLMLPFRFSAGGDSGQKGPAVSAQEAQMQA
IMQQARLAMRGPTGPMGLTGRPGPLGPPGVPGLKGESGEAGPQGPRGPLGSPGPAGKPGR
RGRPGADGARGMPGQSGPKGDRGFDGLAGLPGEKGHRGEPGPSGPPGAPGEDGERGDDGE
IGPRGLPGEPGPRGLLGPKGPQGPPGPPGVTGMDGHPGPKGNIGPQGEPGPPGQQGNPGA
QGLPGPQGAIGPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPSGEKGHMGPAGPQGPIGY
PGPRGVKGADGVRGLKGNKGEKGEDGFPGFKGDMGIKGDRGELGPAGPRGEDGPEGPKGR
SGLPGDAGPLGPSGEKGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGTRGTAGKPGP
RGQRGPTGPRGERGPRGPTGKAGPKGNSGNDGPPGPPGERGLPGPQGPTGFPGPKGPPGP
AGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGDRGHPGPPGPPGEQGL
PGAAGKEGAKGDPGPAGPAGKDGPPGQRGFPGERGLPGPVGAHGLKGNEGPHGPPGPAGS
PGERGPAGPAGPTGLPGRPGPQGPPGPAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPGGP
PGPPGEDGDKGEIGEPGQKGSKGDKGEHGPPGPTGPQGPVGAPGPAGADGEPGPRGQQGL
FGQKGDEGARGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGP
QGPPGGIGNPGAVGEKGDAGETGEPGLQGEVGPPGPRGERGEKGEAGPAGAAGPPGPKGP
PGDDGPKGSPGPSGFPGDPGPPGEPGPAGLDGPPGDKGDDGEPGQPGSPGPTGESGPSGP
PGKRGPPGAAGPEGRQGEKGAKGEPGLEGPQGKTGPVGPQGSPGKPGSEGLRGIPGPVGE
QGLPGPPGPDGPPGPMGPPGLPGLKGDSGVKGEKGHPGLIGLIGPPGEQGEKGDRGLPGP
PGTAGPKGDNGIAGPSGPLGPLGPPGLPGPPGPKGAKGSSGQTGPKGETGTPGPPGPPGP
PGDVIHPLPIHAPIKGRTRRNIDASQMVDDAAVDANYKDYDDGMEEIFGSLNSLKLEIEQ
MKHPLGTQSNPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIFPD
KKSEGSKMAKWPKDSPGTWYSHYKRGSLLSYVDAEGNPIGVVQMTFLRLLSAAARQNMTY
NCYQSVAWHDQEQDNYDKAIRFLGSNDEEMSYDNNPYIRAMVDGCALKKGYEKTVLEINT
PKVEQVPFVDIMFNDFGGSTQKFGFEVGPVCFIG
NT seq 6045 nt   +upstreamnt  +downstreamnt
atggatacccatataagatggaaagttaaacggaggataagggacgcccaaatcacttta
gcggtgattctgctttttgtcacatcgcaagcaagttcagcggaaccagcagacctcttg
aagattttagattttcacagtttacctgagggtgttacaaaaacaacgggtttctgctca
catagaaggtcaacacaaggacccgatgtggcttacagagtttccaaagacgcccagctc
agcgcccccaccaaacagctgtatccaggtgatgtgttccctgaggacttttccatcttg
gccacagtgaagcccaagaagggcagccagtccttcctgttgtctgtgtacaatgaacaa
ggcatccagcagctcggactggaagtgggacgctctcctgtgttcctgtacgaggaccac
acaggaaaacccagccccgaggactaccccctcttcagaggagtcaacctagctgatgga
aagtggcatcgagtggccatcagtgtgcacaagcagaccatcaccctcattctggactgt
aaaaagaagaccacccagaagctgctccgaagccccagccccatcatcgataccaaagga
attatagtgtttggaactagaatacttgatgaagaagtctttgagggagacatccagcag
ctaatgattgtagcagaccatcgtgctgcctatgactactgtgagcactacagccctgat
tgtgaagtgccagtgcccgatcagcctcagaaccaggaccccaacacagacgaatataac
acagaagaggacagctactattatgaatatccttactatgaggacgtggatggcaagcct
tatgaatcatctcctgataccgagacaaccacagaagaagtcaaggtaacaggaacagat
ggggacaaagtggcgaccacagtgaaggaggttataaggggttctggtggcacctccacc
tccatctccacaagctcgtcctctggcacatcctctggctcatcctcaagttcatcctca
agctcatcctctagctcatccagcagctcttcttcaagctcttcaggtactgccaccggc
ggaggaggagatgcctatggagaggagaccagcccttatgacagctatgatgcttatggt
aactatgagacctactacgatgagtccacagctgcacctgacggtgatacctctcgacgt
gtcaccatcaccagcattggcactgggggtgagctggatttgggagcaggggccaagatc
gacttgggtgcaggaactggaattgaaaggagcgtcatcaccaggggatcaggatctaca
accgtctctatcaatgaaacagcagtgggaggttcctacgatgactacggcgatggatat
gattatggtgtggatagccattacaccactggtggaggtggcagcagcagcaggaccgtt
cacattagcggtggaggtggcggcggcagcagcagcagcactgtccacgtcggtggtgga
ggtggcagtggcggaagcagcagcagcactgtgcacatcagtggtggaggtggtgggagc
agcagcagttccaccatcaccatcggagagggaagctctgtctctacgagtggatcttcc
accgctggaggtggctcagccagcgctggcaccggagctggagggtccatcgctacagga
acaggccagggtgtggagggcgaaggtgactacacagatctggatgggttcaaggaggag
cacatcacagactatagcgatttagatctctatgacacctacggagaactggattacgac
acagatcgcaaaccgctgcctgccgagaccgatgagtattatggacaggtcgacggagct
cgtggcgagaagggacagaagggagagcctgctgttattgagcctggaatgttggtggag
ggtccacctgggcctgaggggccaacaggtctccctggacccccaggtgcttctggccca
ccaggcagtcctggagatcctggagagaggggtcctccaggtcgctctggtcttcctggt
gctgatggtctgccaggaccccctggcactgtcctgatgctgcctttcagattcagcgct
ggaggtgactctggacagaagggacctgctgtgtcagcacaggaggcccagatgcaagcg
atcatgcagcaggcgaggctggctatgcgcggccctacaggtccaatgggtctgactggc
agacctggtcctctgggtcctcctggtgtaccaggactgaagggagagtctggagaggca
ggacctcagggaccacgtggaccattgggatcccctggacctgctggaaagcctggcaga
aggggtcgtcctggagccgatggtgccaggggcatgccaggacagtctggacccaaggga
gacagagggtttgatggtctggctggacttcctggtgaaaaaggacacagaggtgaacct
ggcccatctggacctcctggtgctccaggagaggatggagagaggggagatgatggagag
atcggacccaggggacttcctggtgaaccagggccccggggtttgcttggaccaaaggga
cctcagggacctcctggaccccctggtgttactggaatggatggccatcctggacccaaa
ggaaacattggacctcaaggagagccaggacctcctggacagcaaggaaacccaggtgcc
cagggacttccagggccccaaggagccattggacctccaggagagaagggtcctactgga
aagccaggcttgccaggaatgccaggagctgatggcccaccgggtcaccctggaaaggag
gggccttctggagagaaaggacacatgggccctgctggccctcaaggacccattggctat
cctgggccccgaggtgtgaagggagccgacggtgttcgtggtcttaaaggaaacaagggt
gaaaagggagaagacggcttccccggcttcaagggagatatgggtatcaagggcgacagg
ggagagctcggaccagcaggaccaagaggagaagatggtccagaggggccaaagggtcgc
tcaggtctcccaggagatgctggtcctcttggcccatctggtgagaagggtaaacttgga
gttcccgggttgccaggatatccaggaagacaaggaccaaagggatctcagggtttccaa
ggtttccctggcgccaacggagagaaaggaactcggggaacagcaggaaagcctggccca
cgcggacagagaggaccaacggggcctcgaggagagagagggccaagaggaccaacagga
aaagctggaccaaagggtaactcaggaaatgacggcccaccgggacctcctggtgagagg
ggtctgccagggcctcagggaccaacaggtttcccaggaccaaagggtcctcctggacct
gcagggaaagatggactgcctggacatcctggacagagaggagagactggattccaaggc
aaaactggccctcctggtcctccaggtgtggttggacctcagggaccaacaggtgagact
ggaccaatgggagatcggggccaccctggacccccaggtccacctggtgagcagggtcta
cctggtgctgcagggaaagaaggagccaagggtgaccccggccctgctggcccagcaggt
aaggacggccctcctgggcaaagaggtttccccggagagagaggtcttcctggccctgtg
ggggctcatggcctgaaagggaatgaaggtcctcatggcccacctggccctgctggttct
cctggcgagcgtggtcctgctggcccagccggacctaccggtcttcctggacgtcctgga
ccccagggacctccaggccctgctggagagaaaggtggaccgggagagaaaggacctcaa
ggcccagctggaagagatggtattcagggacctgtgggtctgccaggacctggaggacct
cctggaccacctggagaggatggagacaagggagaaattggagagccaggccagaaggga
agcaagggcgacaaaggagaacatggtccacctggtcctactggccctcaaggacccgtt
ggagcacctggtcctgctggcgcagatggtgaacctggtcccagaggtcagcagggtctg
ttcggccagaagggagatgaaggagcaagaggattcccaggacctccaggcccagtcggg
ctgcagggcttgcctggtccacctggcgagaaaggtgaaactggagacgttggtcagatg
ggtccacctggtccccctggtcccagaggcccctcaggacccccaggagctgacggccct
cagggacctcctggtggtatcggaaaccctggcgctgtcggagaaaagggagatgctggt
gaaacaggagagccaggtcttcagggagaagtcggcccaccaggtccaagaggagaacga
ggagaaaagggagaagctggtccagctggtgcagctggacctcccggccctaagggtccc
cctggagatgatggtcctaaaggcagcccaggtccaagtggtttccctggtgaccctggc
ccccctggagagcccggtcctgctgggttagatggtccacctggtgacaagggagatgat
ggagagcctggtcagcctggttcacctggacctactggagagtctggtccctctggacca
ccagggaagagaggcccccctggagcagcaggacctgaaggaagacaaggagagaaggga
gccaagggagagcctggcttggaaggtccccaaggaaagacaggtcccgttggtcctcaa
ggatcacctggcaagccgggttctgaaggcctcaggggtattcctggcccagttggagag
caaggtctacccggtcctccaggcccagatggacctcctggacctatgggccctcctggt
ttacccggtttgaaaggagactctggtgtcaaaggagaaaagggccatccaggtcttatt
ggtcttatcggacccccaggtgaacaaggagaaaaaggtgacagaggtcttcctggtcct
ccaggaacagctgggcccaaaggagacaatggtattgctggtccctcaggtccacttggt
ccactgggtcctcctggattacctggtcctcctggtcccaagggagctaaaggatcatct
ggtcaaactggaccaaagggagagactggtacacctggacctcctggccctcctggccct
cctggcgatgttatccacccactccccattcacgctcccattaagggcagaacgcgtagg
aacattgatgccagccagatggtggacgatgcggccgtggatgccaactacaaggactac
gatgacggcatggaggaaatctttggctcactcaactccctgaaactggagatcgagcag
atgaagcacccgctgggcacacagagcaaccctgctcgtacctgcaaggacctgcagctc
tgccaccctgatttccccgatggtgagtactggattgatccaaaccagggctgttctcgg
gactccttcaaggtttactgcaacttcacagcaggtggagagagctgcatcttcccagat
aagaagtctgaagggagcaaaatggcaaaatggcccaaagactcgccaggcacatggtat
agtcactacaagagaggttccctgctctcctatgtggatgcggagggcaacccgatcggc
gtggtccagatgactttcttgcggttgctgagcgcggcagccaggcagaacatgacgtac
aactgctaccagtcggtggcctggcacgaccaggagcaggacaactacgacaaggccatc
cgcttcctgggctccaacgatgaggagatgtcttatgataacaacccctacatccgcgca
atggtcgatggctgtgcgttgaaaaagggctatgaaaagacagtacttgagatcaacaca
ccaaaggtggaacaggtgccatttgtggacatcatgttcaacgattttggaggttccacg
cagaagtttggatttgaagtgggccctgtctgtttcatcggctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (86)   
   KEGG ORTHOLOGY (1)   
   RefGene (82)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (100)   

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