KEGG   Lates calcarifer (barramundi perch): 108898561
Entry
108898561         CDS       T04895                                 
Symbol
col1a1a
Name
(RefSeq) collagen, type I, alpha 1a isoform X1
  KO
K06236  collagen type I alpha
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04510  Focal adhesion
lcf04512  ECM-receptor interaction
lcf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    108898561 (col1a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108898561 (col1a1a)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108898561 (col1a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:lcf00536]
    108898561 (col1a1a)
Glycosaminoglycan binding proteins [BR:lcf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108898561 (col1a1a)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 108898561
NCBI-ProteinID: XP_018553992
Position
LG11:19938887..19961490
AA seq 1447 aa
MFSFVDLRLALLLSAAVLLVRAQGEDDRTGGSCTLDGQVFADRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPIIPHDECCPICPDDGFQESKVEGPKGERGPKGDRGPPGPPGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGYEDKSPAVAVIGPMGPMGPRGPPGPPGSS
GPQGFTGPPGEPGEAGPSGPMGPRGPGGPPGKNGEDGESGKPGRPGERGPPGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGETGPAGPKGEAGAPGENGTPGAMGPRGLPGERGRVGAA
GSAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGAKGDAGPQGARGAEGPSGARGEPGNP
GPAGPAGPAGNPGTDGAPGAKGAPGAAGVAGAPGFPGPRGPPGTQGAAGAPGPKGNTGDV
GSPGAKGEAGAKGEAGAPGVQGPPGPPGEEGKRGARGEPGAAGVRGAPGERGGPGGRGFP
GADGSAGPKGAPGERGAPGLVGPKGATGEPGRTGEPGLPGAKGMTGSPGSPGPDGKMGPS
GAPGQDGRPGPPGAVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPTGPVGAPGKDGDV
GAPGPAGPAGPAGERGEQGAAGAPGFQGLPGPQGAVGETGKPGEQGLPGEAGAPGPAGAR
GDRGFPGERGAPGPIGPAGARGSPGAAGNDGAKGDAGAPGAPGAQGPPGLQGMPGERGAA
GLPGLRGDRGDQGAKGADGAPGKDGPRGLTGPIGLPGPAGATGDKGEPGAVGLVGPAGAR
GPPGERGEAGPPGPAGFAGPPGADGQPGAKGEPGDNGAKGDAGPPGAAGPTGAPGPQGPV
GNTGAKGARGPAGPPGATGFPGAAGRVGPPGPSGNPGPPGPAGPSGKEGPKGNRGETGPA
GRPGEVGAAGPPGSSGEKGSPGADGAPGSAGLPGPQGIAGQRGIVGLPGQRGERGFPGLH
GPAGETGKQGPAGPGGERGPPGPMGPPGLAGAPGEPGREGAPGNEGAAGRDGAAGQKGER
GETGAAGAPGAPGPPGAPGPVGPAGKNGDRGETGPAGPAGPAGPAGPRGPAGAPGLRGDK
GETGEAGERGMKGHRGFTGMQGPPGPSGPPGDQGPAGSAGPAGPRGPAGSAGSPGKDGMS
GLPGPTGPPGPRGRSGEMGPAGPPGPPGPPGAPGAPGGGFDLGFIAQPQEKAPDPFRMYR
ADDANVLRDRDLEVDSTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWID
PDQGCTQDAIKVYCNMETGETCVPPTQREVAQKNWYVSKNIKEKKHIWFGEAMNDGFQFE
YGSEGSLPEDVNIQLTFLRLMSTEASQNITYHCKNSVAYMDANAGNLKKALLLQGSNEIE
IRAEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGLE
VGPVCFL
NT seq 4344 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatttgcggctggcgctgctgctcagtgcagcagtgctcctggtc
agagcgcagggcgaggacgaccgcacgggcggaagctgcaccctggacggccaggtgttt
gcggaccgtgacgtctggaagccggagccatgtcagatctgcgtgtgcgacagcggcaca
gtgatgtgcgatgaggtcatctgcgaggacacgacagactgccccaaccccatcatcccc
cacgatgagtgctgccccatctgccccgacgacggcttccaagagtccaaagttgaggga
cccaagggagagcgtggacccaagggagacagaggtcctcctggtccccctggtaacgat
ggtatccctggccagcccggacttcctggacctcccggcccccctggaccccctggcctt
ggtggaaacttctcccctcagatgtctggtggctatgaagataaatctcctgccgtggct
gtgattggacctatgggcccaatgggaccccgtggacctcctggacctcctggttctagc
ggacctcagggattcactggcccccctggtgagcctggagaggctggaccttctggcccc
atgggtccccgtggtcctggaggccctcctggaaagaacggagaggatggtgagtctggc
aaacccggtcgcccaggtgagcgcggacctcccggtccacagggagcccgtggtttccca
ggaactcctggtctccctggaatcaagggacacagaggattcagtggtctggatggtgct
aagggagagactggtcctgctggacccaagggagaggctggagctcctggtgagaatgga
acccctggtgctatgggacctcgtggcttgcctggcgagagaggccgtgttggtgctgct
gggtctgctggagctcgtggtaatgatggtgctgctggtgctgctggacctcctggtccc
actggcccagctggacctcctggattccctggtggccctggagccaagggtgatgccgga
cctcagggtgctcgtggagctgagggcccctctggagcccgtggtgagcctggaaaccct
ggacctgctggccccgctggacctgctggaaaccccggaactgatggagcccccggagct
aagggagcccctggtgctgctggagttgctggagctcccggtttccctggaccccgcgga
cccccaggaactcagggtgctgctggcgcccctggaccaaagggtaacactggtgatgtt
ggttccccaggagccaagggagaggccggtgccaagggagaggctggtgctccaggagtt
caaggacccccaggacctcctggtgaggagggcaagagaggagccagaggagagcctggt
gctgcaggagtccgtggagctcctggagagcgaggtggtcctggtggtcgtggtttccct
ggtgctgatggctctgctggacccaaaggtgcccctggtgagcgtggtgcccctggattg
gttggacctaaaggtgccactggtgagcctggccgcactggcgagcctggtctgcctgga
gctaagggtatgactggcagccccggcagccctggacctgatggcaagatgggaccttct
ggagcccctggacaagatggccgccccggaccccctggcgctgttggagctagaggccag
cctggagtcatgggattccccggacccaagggagccgctggtgagggtggaaagcccggt
gagagaggagtaatgggacccaccggccctgttggtgctcctggaaaggatggtgatgtt
ggtgccccaggccctgctggacctgctggtcccgctggcgagagaggagagcaaggagct
gctggagctcctggattccagggtcttccaggaccccagggtgctgttggtgagactgga
aagcccggagagcagggtctgcctggtgaggctggagcccctggacctgccggagccaga
ggtgacagaggattccctggtgagcgtggtgcacctggacctattggaccagctggtgcc
cgtggatcccctggagctgctggaaacgatggtgctaagggagatgccggagcccctggt
gctcccggagctcagggtcctcctggactgcagggaatgcctggtgagcgcggtgcagct
ggtcttccaggactgaggggagacagaggtgaccaaggagcaaagggcgctgatggagct
cctggtaaggatggtccccgcggtttgactggaccaattggacttcccggacctgctgga
gccaccggagataagggagagcctggtgccgttggacttgtcggacctgctggagcccgt
ggaccccctggtgagcgtggagaggccggaccacctggacctgctggattcgctggacct
cctggtgctgatggacagcctggtgctaagggagagcctggagataatggtgctaaggga
gatgctggtccccctggtgctgctggacccactggtgctcctggacctcagggtcctgtt
ggaaacactggcgccaagggagcccgtggacctgctggacctcctggtgctactggcttc
cctggtgctgctggcagagttggacctcccggcccctctggcaaccctggacctcccgga
cccgctggaccctctggcaaggaaggacccaaaggaaaccgtggtgagactggacccgct
ggtcgccctggtgaggttggtgctgctggacccccaggaagttctggagagaagggtagc
cctggcgctgatggtgcacctggtagcgctggtctgcctggacctcagggtattgctgga
cagcgtggtattgttggtctgcctggacagagaggagagagaggcttccccggcctgcat
ggacctgctggagagactggaaagcagggacctgctggccccggtggtgagcgtggacct
cctggacccatgggaccccctggactggctggagcccctggagagcctggacgcgaggga
gcccctggtaacgaaggagcagctggccgtgatggagccgctggacaaaagggagaacgt
ggagagacaggcgctgctggagcccctggtgcccctggaccccctggtgcccccggacct
gttggacccgctggaaagaacggcgaccgtggagagactggacctgctggcccagctggc
cctgctggccctgctggacctcgtggccctgctggagctcctggactccgtggagacaag
ggagagactggagaggctggagagagaggcatgaagggacacagaggattcactggcatg
cagggacctcctggaccttctggaccccctggagatcagggacctgctggttctgctgga
cccgctggtcctagaggccctgctggatctgctggttctcctggtaaggatggtatgagt
ggtctgcccggacccactggacctcctggacctcgtggacgcagtggcgagatgggacct
gctggacctcctggacctcctggtcctcctggagcacctggagctcctggtggtggattc
gaccttggcttcatcgcccagcctcaggagaaggcacctgatcccttccgcatgtaccgc
gctgatgacgctaacgttctccgtgaccgtgatctggaggtggacagcaccctgaagagt
ctcagccagcagattgagcagatccgcagccctgatggcacccgcaagaaccctgccaga
acctgccgtgacctcaagatgtgccaccctgactggaagagcggtgagtactggattgac
cctgaccagggctgcactcaggatgccatcaaggtctactgcaacatggagactggagag
acctgtgtacccccaactcaacgcgaggttgcccagaagaactggtacgtcagcaagaac
atcaaggagaagaagcacatctggttcggagaggctatgaacgatggcttccagttcgag
tatggcagcgagggctctctgcctgaggacgtcaacatccagctgaccttcctgcgtctc
atgtccaccgaggcatcccagaacatcacctaccactgcaagaacagcgttgcctacatg
gacgccaatgctggcaacctgaagaaggccctgctcctccagggctccaacgagatcgag
atcagagccgagggcaacagccgcttcacctacagcgtcctggaggatggatgcacgtca
cacaccggtacatggggcaagacagtcatcgactacaagacatcgaaaacatctcgtctg
cccatcattgatattgctcctatggacgttggtgctccagaccaagagtttggccttgaa
gttggacccgtctgtttcttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (88)   
   KEGG ORTHOLOGY (1)   
   RefGene (84)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (107)   

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