KEGG   Lates calcarifer (barramundi perch): 108898928
Entry
108898928         CDS       T04895                                 
Name
(RefSeq) elongation factor 1-alpha
  KO
K03231  elongation factor 1-alpha
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108898928
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108898928
   03016 Transfer RNA biogenesis [BR:lcf03016]
    108898928
   03012 Translation factors [BR:lcf03012]
    108898928
   04131 Membrane trafficking [BR:lcf04131]
    108898928
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108898928
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     108898928
Transfer RNA biogenesis [BR:lcf03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    108898928
Translation factors [BR:lcf03012]
 Eukaryotic type
  Elongation factors
   108898928
Membrane trafficking [BR:lcf04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Other CMA associated proteins
    108898928
Exosome [BR:lcf04147]
 Exosomal proteins
  Proteins found in most exosomes
   108898928
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4
Other DBs
NCBI-GeneID: 108898928
NCBI-ProteinID: XP_018554590
Position
LG3:18686806..18690747
AA seq 461 aa
MGKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
DKLKAERERGITIDIALWKFETNKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
GEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSEARFNEIQKEVSAFVKR
TGYNPSAVAFVPISGWHGDNMLEASDKMPWFKGWSIERKEGNVSGTTLLEALDAILPPSR
PTDKPLRLPLQDVYKIGGIGTVPVGRVETGRLKPGMVVTFAPPNLTTEVKSVEMHHESLP
EAVPGDNVGFNVKNVSIKEIRRGYVAGDSKNNPPKAADTFNAQVIILNHPGEIHQGYAPV
LDCHTAHIACKFSELIEKIDRRSGKKLEDNPKMVKSGDAAIVKLLPQKPMVVEPFSEYPP
LGRFAVRDMKQTVAVGVIKCVDIKDVCGKTTKAGEKAQKKK
NT seq 1386 nt   +upstreamnt  +downstreamnt
atggggaaggaaaaaatccacatcaacatcgtggtcattggccacgtcgactccggcaag
tccacgtccactggccacctgatctacaagtgcggaggaatcgacaagagaaccatcgag
aagtttgagaaggaagccgctgagatgggcaagggctccttcaagtacgcctgggtgctg
gacaaactgaaggccgagcgtgaacgtggtatcaccattgacatcgctctgtggaagttt
gagaccaacaaattctacgtgaccatcattgatgcccctggacacagggacttcatcaag
aacatgatcactggtacctctcaggctgactgtgctgtgctgatcgttgctgctggtact
ggtgagttcgaggctggtatctccaagaacggccagacccgtgagcacgccctgctggcc
tacacccttggtgtgaagcagctcattgttggagtcaacaagatggactccactgagccc
ccttacagcgaggcccgttttaatgaaatccaaaaggaagtgagtgcctttgtcaagagg
accggttacaacccaagcgctgttgcctttgtccccatctctgggtggcacggagacaac
atgctggaggccagtgacaagatgccctggttcaagggatggtcgattgagcgcaaggag
ggtaatgtcagtggaaccacactgctggaagctctggatgccatcctgccccccagccgt
cccaccgacaagcccctccgtctgcccctgcaggacgtctacaaaattggcggtattgga
actgtccccgtcggtcgtgtggagactggtcgcctgaagcctggcatggtcgtcaccttt
gctccccccaacctgaccactgaggtgaagtctgtggagatgcaccacgagtctctgccc
gaggctgtccctggtgacaatgttggcttcaacgtcaagaacgtatccatcaaggaaatc
cgtcgtggatacgtggctggcgacagcaagaacaacccacccaaggctgccgacaccttc
aatgcccaggtcatcatccttaaccaccctggtgaaatccatcagggttacgcccctgtg
ctggattgccacaccgctcacattgcctgcaagttcagtgagctcatcgagaagatcgac
cgtcgttccggcaagaagcttgaagacaaccccaagatggtcaagtctggagacgccgcc
attgtcaaactgcttccacagaagcccatggttgtggagcccttctctgaataccccccc
cttggtcgttttgccgtgcgtgacatgaagcagacggtggctgttggtgtcattaagtgt
gttgacatcaaagatgtttgtggaaagacaaccaaggctggagagaaggcccagaagaag
aaatga

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (138)   
   KEGG ORTHOLOGY (1)   
   RefGene (134)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (155)   

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