KEGG   Lates calcarifer (barramundi perch): 108900777
Entry
108900777         CDS       T04895                                 
Name
(RefSeq) nucleoporin p58/p45 isoform X1
  KO
K14307  nucleoporin p58/p45
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108900777
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108900777
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108900777
SSDB
Motif
Pfam: Nucleoporin_FG2 Siah-Interact_N Nup49_C PSY3 FapA Phage_int_SAM_5
Other DBs
NCBI-GeneID: 108900777
NCBI-ProteinID: XP_018557516
UniProt: A0A4W6FUL1
Position
LG24:complement(8182880..8196784)
AA seq 594 aa
MSGFNFGSGTLGSTSTGGGFAFGASTSAPAASTGGFSFGTALGTVAATPASTTSTTPSLG
LGGSLFGQKPTGGFSSSAAAPTTGLTLGAPATTAASTGFSLAFNKPTASATPFSLTTTAT
TSSSAPAGAGLTFGSVLTSTAPQQPAATSFTLGLGATTTTTAASTVPSLGGGLFSSTVST
GLGQTTLGGGGLTLGSLLAAPTTASVAPAPSIGLGGVDFSTSSENKSDTSSGANAQDSKA
LKDENLPPVICQDVENFQKFVKEQKQVQEDISRMSSKAISKVQDDIKSLKQLLSVSASGL
QRQALAIDKLKLETAQELKNADIALRTQKTPPGLQHENTAPSDYFRSLVEQFEVQLQQYR
QQIEELENHLTTQSTGSHITPQDLTLAMQKLYQTFVAQAAQLQSVHENVKILKHQYLSYR
RAFLEDSTDVFESKRASNRKWQSTPRVTTGPAPFSSVPNAAAVAMAATLTQQQQPTPGTQ
APLGAGFGNPFASAVGTSLGSSTLGGFGGGPGFGGVGTGGSSFAFSSTSKPTGGSLSAGF
GSSSSTGFNFSNPGINPSAGLTFGVSNPPAAGFGTGGPLLQLKKPPAGNKRGKR
NT seq 1785 nt   +upstreamnt  +downstreamnt
atgtctggctttaactttggatcaggaactcttggttccaccagcacgggtgggggattc
gcgtttggggcatcaaccagcgcacctgccgccagtaccggtggcttctctttcgggact
gctctgggtacagtagcggccactcctgcctccaccaccagcaccactccatctcttggc
ctgggaggcagtctctttggtcagaaacctactggaggattctcttcaagcgctgctgca
cccactacaggccttacattaggtgccccagccactacagctgcctcaacgggctttagc
ttggctttcaacaagcccactgcctcagcgacaccgttctccctcaccaccacagctacc
acctcctcgtcagcccctgctggggcgggtttaacatttggctctgtcctgacgtccaca
gcaccacagcagcctgcagccacctcttttaccctcggccttggtgccactacaacaacc
acagcagcctcaacagtcccctctctgggtgggggtctcttctccagcactgtgtctaca
ggtttgggtcagaccactctcggaggaggtgggttaaccctaggttctctgttagctgct
cccacaacagcatcggtggcccctgcacccagtattggcctgggaggagtcgacttcagc
acttcctctgagaataagagcgacacatcgtctggagccaatgcacaggacagtaaagcc
ttaaaagatgagaatctgcccccagtcatttgtcaggatgtcgagaatttccaaaaattt
gtgaaggagcagaaacaagttcaagaggatatcagcaggatgtcatctaaggccatttct
aaagtccaagatgacatcaagagcctcaaacagcttctctctgtcagtgccagtggtctg
cagcgccaagctttggctatagacaaactaaagctggagacagcgcaggagctgaaaaat
gcagacatagcactgcgtacacaaaagactccccctggacttcaacacgagaacactgct
ccatctgattattttcgcagcctggtggagcagtttgaggtgcagttacagcagtaccga
cagcagatagaagagctggagaaccacctgacaacgcagagcactggttcccacatcact
cctcaggacttgactttggccatgcagaagttgtaccagacatttgttgcacaggctgcc
cagctccagtcagttcatgaaaacgtcaagatcttaaagcatcagtacctttcctatcgt
cgggcattcctagaagattccacggatgtctttgagtccaaacgggcatccaacaggaag
tggcagagtaccccgagagtcacaacagggcctgccccattctccagtgtgcccaacgct
gcagctgttgccatggcagccacgttgacccagcaacagcagccaactccagggacccag
gcacccttgggggcagggtttggaaacccctttgcctcggcagtgggcactagcttgggc
tcctctacccttggaggttttggtggtgggccaggatttggtggggtggggactgggggg
tcttcttttgccttctcctccaccagtaagcccacaggaggcagtctgagtgcaggtttc
ggtagcagcagcagcacaggcttcaacttcagtaatcctggcatcaacccctcggccggt
ctgacctttggggtgtctaatccacccgctgcaggctttggcacaggagggcctcttctc
cagctcaagaagccccctgctggtaataagaggggcaagagatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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