KEGG   Lates calcarifer (barramundi perch): 108901024
Entry
108901024         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: X-ray repair cross-complementing protein 5
  KO
K10885  ATP-dependent DNA helicase 2 subunit 2
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    108901024
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108901024
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     108901024
SSDB
Motif
Pfam: Ku Ku_N Ku_PK_bind Ku_C VWA_2 VWA DUF6005 DUF4599
Other DBs
NCBI-GeneID: 108901024
NCBI-ProteinID: XP_018557864
Position
LG1:complement(20110651..20117424)
AA seq 718 aa
MAGAKSALVLCMDVGFSMSNSAPGEEPPFELAKKVIQKFVQRQVFAETKDELALVLFGTD
STKNPLDQDGQYQNITIHRHLMMPDFELLEEIQNQIHPESQQADWLDALVVCMDLLQRET
KGKKYDRLNIVLLTDLNTGASADHLDVIIENLKKDGITLQFFLPFPVEEDEEGGGDADRR
GPSHPGMGKGLSREQKNSMDMMKHIMLSLDEEDGLDQIYTFTNAIEQLCMFKRIERRPMS
WPCQLTIGSSLSIRIVGYKAVTEEKLKKLWISVDAQTNKREDLKRETVYCLDDDNETEVQ
KDDTIQGFRYGSDIVPFSKVDQEQMKYTHDGKCFAVLGFTKQSLVHRHQFIGNQVIKIFA
PKDDEHAGVALSAVIRALHELKMVAIVRYAYDRRSNPQVGAAFPCIKQDYECLLYVQLPF
TEDLRQFTFPSLENNKKFTPSDTQLSAVDSLIDSMMLVEENENGEQVDMFKVHQLPNPAF
QRHFQCLHHRAVSPGTPLPPMEPWLKAALERPEVISERCQAPLEEMRKTFPLTEVEKKKK
VKTSAQLFGKDSEEPDAKKAKGDEEEEEYNLADIAEGSVTSVGSVDPARDFRILIKQKSR
PFGEVCQQLTHRIEQLLSNKNTQYYMKSITCIQAFREQSIEQGNADLYNSYLQSLKRSIP
NRGLEVFWDLLVQDAITLISKDEVEGSTVSRIEAKQFLVAEEKKEEAAAPPAGRYRRC
NT seq 2157 nt   +upstreamnt  +downstreamnt
atggcaggagcaaaatcagcactggtgctgtgcatggatgtggggttctccatgtccaac
tctgccccgggtgaggagcctccctttgaacttgccaaaaaagtcatccagaagtttgtc
cagcgtcaggtttttgctgagacaaaggatgaactggctttagttctgttcggcacagat
tccaccaaaaaccctctggaccaggacggccaataccagaacatcaccatccaccgccac
ctaatgatgccagattttgagcttctagaggaaattcagaatcagatccacccagagagt
cagcaagcagattggctggatgctcttgttgtctgcatggatctcctacagagagaaact
aaagggaagaagtacgatcgtctcaacattgtccttctgactgacctcaacacgggtgct
agtgcagaccacctggatgttattattgaaaacctgaaaaaagatggcatcaccttgcag
ttctttttgcctttccctgtggaggaggatgaggagggtggaggggatgcagacagaaga
ggccccagtcaccctggcatgggcaaaggtctctccagggagcagaagaatagcatggac
atgatgaaacacatcatgctgagcctggacgaggaggacggcctggatcaaatttataca
ttcacgaatgcaatcgagcagctgtgcatgttcaaacgcatcgagaggagaccgatgtcc
tggccctgtcagctgactattggaagctctctgtccatccgtatcgttgggtacaaagct
gtgacagaagagaagctgaagaagttgtggatatcagtcgacgctcaaaccaataaaaga
gaggacttgaagagagagactgtctattgtctggacgatgacaacgagacggaggtgcaa
aaggatgataccattcaaggttttcgttatggaagtgacattgttcccttctccaaagtg
gatcaagagcagatgaaatacacacatgatgggaagtgctttgcagttctaggcttcacc
aaacagagcctggtacatcgtcatcagttcattggaaatcaggtcatcaagatatttgct
cccaaagatgatgagcatgcaggagtggccctgtcggccgtcatccgggcgctgcatgaa
ctcaaaatggtggccattgtgcgttacgcctatgaccgacgcagcaaccctcaagtggga
gcagctttcccttgtatcaagcaggactatgagtgtctgttgtacgtccagctgccattc
acagaggacctcagacagtttacattcccttctcttgaaaacaacaaaaagttcactccc
tcagacacccagctgtctgctgtggactctctcattgactccatgatgttggtggaggaa
aatgagaatggagaacaagtagatatgttcaaggtccaccagttgcccaaccctgccttc
cagaggcacttccagtgtctacatcatcgagcagtaagccccggtacccctcttcccccc
atggagccgtggctgaaggctgctcttgagcgccctgaggtcattagtgaacgttgccaa
gctccactggaggagatgaggaagacatttccactcacagaagtagagaaaaaaaagaaa
gtgaagactagtgctcagctttttggcaaagactctgaggaaccagatgccaagaaggca
aaaggagatgaagaagaggaggagtataacctggctgacatcgcggaaggttctgttact
tcggtgggaagcgtggatccagcccgagacttccgcattctgatcaaacagaagagccgt
ccatttggagaggtctgtcagcaactgactcacaggatagagcagttgcttagcaacaag
aacacacaatactacatgaaaagcatcacctgtatccaggcttttagggagcagtccatt
gagcagggaaatgctgatctgtacaatagctacctccagtccctgaaaaggagcatccca
aacagagggcttgaggtcttctgggacctgcttgttcaagatgccataactctgatcagc
aaggacgaggttgagggaagtacggtgtccagaattgaagctaaacagtttttggttgct
gaggagaaaaaagaggaagcggctgcaccaccagctggaagatacaggagatgttga

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