KEGG   Lates calcarifer (barramundi perch): 108901690
Entry
108901690         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA pseudouridine(38/39) synthase
  KO
K01855  tRNA pseudouridine38/39 synthase [EC:5.4.99.45]
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lcf03016]
    108901690
Enzymes [BR:lcf01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.45  tRNA pseudouridine38/39 synthase
     108901690
Transfer RNA biogenesis [BR:lcf03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    108901690
SSDB
Motif
Pfam: PseudoU_synth_1 Tropomyosin Shugoshin_N
Other DBs
NCBI-GeneID: 108901690
NCBI-ProteinID: XP_018558771
Position
LG23:11306600..11310107
AA seq 478 aa
MSEALTQRIKELEAELEKLKSQLRERSGAEEDMEVTSSPCTDENTDCKPDGNSSSSSKKG
KRANKERPFDFSAHPKRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTRLIQDR
QSSNYHRCGRTDKGVSAFSQVITIDLRSTQFCGGLGVTLPENVDLSTKNKAPVSEVPYVK
MLNRVLPQDIRILDWAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAKRYEGTHDF
RNLCKMDVGNGVLQFERTILSASVKPVQPQHTCSTDQYDLFIFEIKGLAFLYHQVRCMMA
VLLLIGQKLESPEIITQLLDIQSNPRKPQYSMAVDYPLVLYDCHFEGMSWKQETEEVNYI
LSALQQHWTQSAVKAHVLLGMIKGLEATGAVSSNHCWLVEGSRKRNYRPLLERPCCESLE
SRIDHFVKRGRLEREEGENGGETVLKGKRSKHSHNSPTLPVSSEMPSSKQSTDHKVED
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgtcagaggcattaacccagcgaataaaggagctggaggcagagctggagaagctcaag
tcccagctgagggagaggagtggagctgaagaggacatggaggtgacttctagtccgtgc
actgatgaaaacacagactgcaaacctgatggtaacagcagcagcagcagtaaaaagggt
aagagagcaaacaaggagcgtcctttcgacttctctgcccaccctaagcgccatgtggct
ctgcggctggcgtacttggggtgggcctaccagggctttgcggttcaggagaacacagac
aacactgtggaggccagactctttgaggctttgctgaagactcggctgatccaggaccga
cagagctccaactatcaccggtgtggtcgcactgataaaggagtcagtgcgttttcacaa
gtcattactatcgatttacgctccacacagttttgcggaggactgggcgtcacactcccg
gaaaatgttgatttaagtaccaagaacaaagcccctgtctctgaggtcccatatgtgaag
atgctgaacagagtcctgccccaggacatcaggatcttggattgggcaccggtagccgag
ggtttcagcgcacgctttgactgtcagtcccgcacttaccggtactacttccctcgagga
tctttggatgtggcgctgatggcagaggctgctaaaagatacgagggcactcacgacttc
cgcaacctgtgcaaaatggatgtgggcaacggagtcctgcagtttgagaggaccatcttg
tccgcatcagtcaagcctgtgcagcctcagcacacctgcagcacagatcaatatgacctc
ttcatatttgagataaaaggattagctttcctttaccatcaggtacgatgcatgatggca
gtgcttctcctgatagggcagaaactggaatccccagagataattactcagctcctggat
atccagagtaaccccaggaagccccagtacagcatggcagtagactaccctttggtgctg
tacgactgccactttgagggtatgagctggaaacaggagactgaagaggtgaactacatc
ctctctgcattgcagcaacactggacccagagtgcagtcaaggcccatgtcctcctcggg
atgatcaagggtttagaggccacaggtgcagtatcctctaaccattgctggctagtagag
ggcagcaggaagagaaactaccgaccattgcttgagcgtccatgctgtgagagcctggag
tctaggatagaccattttgtaaaaagaggcagactagagagggaggagggcgagaacgga
ggtgaaactgtcctcaaaggaaaaaggtccaaacattcccacaattcccccactctgcct
gtctcttcagagatgccgtcatcaaagcaaagtacagaccataaagtggaagattaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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