KEGG   Lates calcarifer (barramundi perch): 108903067
Entry
108903067         CDS       T04895                                 
Name
(RefSeq) DNA polymerase nu isoform X1
  KO
K16618  DNA polymerase nu [EC:2.7.7.7]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    108903067
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108903067
Enzymes [BR:lcf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     108903067
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   A-family DNA polymerase
    108903067
SSDB
Motif
Pfam: DNA_pol_A DNA_pol_P_Exo
Other DBs
NCBI-GeneID: 108903067
NCBI-ProteinID: XP_018560662
Position
LG14:complement(7210195..7297837)
AA seq 1539 aa
MEQSSSRLYSGPLSQAAQKILAVLRAQSNHSNNHRQMERYYGSQREPWAQSSRSMSQEKR
KDRDTDRPWSRPQVSSFSTSHHSSSNEQQSSQTSAYYQYSQTLDSSLSSPASSCWDSSFQ
RQTSQMEAYYQRSQTYSHRKYSQPPAYQSSQAPSFTQCEASEVAACYSLRDRFTLALQIP
ERPSEHQCRNSTDKIRPSFILRLSPDDESPDEILFRTVEHPKAHKKEPGFACHPVSSCRK
ISVETDNGTIGAVKEKKVTKSWNILRNELEDAVASDSQLKWKRPQSDPAEEAISGEDGGV
LHQQSESETIKTGRIHLPPSGFVTSQETRCDAQSLKPMRHLDVEEELIMDSENMTRAGTE
QMSDRDNAMHSGANGVKYEETGQMDATSETHLGRDLDLACTSNMDKQSFHCYSEGSKSKQ
KEDNDPEYRLNTPGVKDVEQPPGIENKEIAVGYHSSSPENISVALERGNNKVNPCQAENL
QVMGQTETAEEHHTEEALVQVQCEPTTLVLGENTANNLDRPTVERDVIEGGSEMETEIGR
NAGIRTGTEDEMETEEPHCSDVQLRDEQCEIDYREAKELPRGDTEPKERGIERDESVMPP
VNSEDESTPTEDSGRERCPTPTLSQECKARGSMFKVACLSGNHQHRDSVQAANRSISGSS
SRIKLAPAGTFATGLNSSTVQDLASSAIKPNKKLENCKLPTFQTHLRQPSPIPSFPLKRK
HEALQHQNENTPHKVCPTRHPPKWEPSHSSQEKAREGGVREWKRIRPKTPVSEHSAEPTE
PQTKASQTQQSCSKMEERGHESTKQTPVSVTFKPPKHKQAKRGPDRDRVGLKISHELSSA
DEPQSRAGYLTETLTSDSRVRDSGKLNMDEKMQMLEKAGRAKALVLTMVYQDGTTQLDPE
QKLTPPVCGLLVLMKNDLDCSVPEDSLGPNDSLVYLKLEQTPAWAQQHTHQSQELFTRDM
LLQVLSKSQLVVCYKAKDLLRTTLQFYKQDLSWKQVAGCHIQDPQVSAWLLDPADPSSSY
QDLLKKHGKRPSTAPALGTKKVPQVISGLTSLYSLNMELCSKLQSQGLWKLYSDMELNMI
PVLAAMESHCIHVDKEALKRTSDLLGTKMKQLEQEAHRAAGQIFLVTSNTQLRTVLFEKL
RLHERCENKKLPKTVNKQQQSTSEAALLQLQDLHPLPKIILEYRQVHKIKSTFVDGILSC
MMSKNYISSTWYQTSVVTGRISAKQPNFQALPRQPLQLTKKQYIQGKEEEVVTVHPRALF
IPQKGCSFLAADFCQVELRLLAHLSSDPELLRIFTNPQADVFTMLASQWKGVSEGQVTSE
DREHAKRIVYSVVYGAGRERLSGILGVSADQARQFQDSFLQTYKEVQVFIQRTIQLCHKQ
GYVLSIMGRRRTLPHINSPDWGIRMQAERQAVNFMVQGSAADLCKMAMIRIFNLVSSSTS
LSARLIAQLHDELLYEVEDSQVEHFAALVKHTMESLQHVDHLGVHLKVNNCNLKVNTFSF
IIVLIVMFSDRTVHMLHLCPIIDTLFLSPLHPSQWRCTQ
NT seq 4620 nt   +upstreamnt  +downstreamnt
atggagcagtctagcagcaggttgtactcaggacctctgtcccaggcggctcagaagatt
ctggctgttctgcgagcccagagcaaccactccaacaatcacaggcaaatggagaggtat
tatggcagccagagggagccttgggctcagagcagcaggagcatgagtcaggagaagaga
aaagacagagacacggatcggccatggtccagaccccaggtgtcgtcattttccacctct
caccacagttcttccaacgagcagcagagctctcagacctcagcctactatcagtactcg
cagacactagacagctccctttcatccccggcctcctcctgctgggattcctcgttccaa
aggcaaacgtctcagatggaagcctattatcagcgctcacagacttattcccacagaaag
tactcccaaccccctgcttaccagtccagccaggctccatcattcactcagtgtgaggct
tctgaggtggcagcatgctactcccttagagacagattcaccctggccctccaaatacct
gagagaccttctgaacatcagtgtagaaactccactgacaaaatcaggccgtctttcatc
ctccgtctttctccagacgacgagagtcctgatgagatattgttccgcacagtggaacac
ccaaaagcccataaaaaggagcctggttttgcttgtcatccagtctcatcctgccgtaaa
ataagtgttgagaccgataacggcaccataggtgcagtgaaagaaaagaaagttacaaaa
agctggaatatcctcagaaatgagctagaagacgctgtagcttcagacagtcaactaaag
tggaagcgacctcagtctgaccccgctgaggaggccattagtggagaagatggaggcgta
ttacatcaacaatcagagtctgaaacaatcaaaactggaaggatacatttacctcccagt
ggttttgtaacaagtcaggagacacgctgtgatgcacaatcactcaaaccaatgagacat
ctagatgtggaggaggaactgataatggattcagaaaatatgactcgggcaggaacagaa
caaatgtcagacagagacaatgcaatgcacagtggagcaaatggagtcaagtatgaagag
acaggacaaatggatgcaaccagtgagactcatttagggagggatctggacttggcatgt
acaagtaatatggacaaacaaagcttccattgttattctgagggttcaaagtctaagcag
aaagaagataatgacccggagtacagacttaatacaccaggagtcaaagatgttgagcaa
ccacctggcattgagaataaagagatagcagtgggatatcattccagcagtccagaaaat
atctcagtagctttagaaaggggaaacaacaaggtgaacccctgccaagctgagaacctt
caagtcatgggtcagactgaaacagcagaggagcaccacacagaggaggcactggtgcag
gtgcagtgtgagcccaccacattagtcctgggtgaaaacactgctaataacctggacaga
cccacagtggaaagagatgtgatagagggtggatcagagatggaaacagagattgggaga
aacgcaggcattcgcacaggcactgaggatgagatggagactgaagagcctcattgttct
gatgtccagctaagagatgaacagtgtgagatagattatagagaagctaaagagttacct
agaggagacactgagccaaaagagagagggatagagagagacgagtcagtgatgccacct
gtgaacagtgaggatgagagtacacctacagaggactcagggagagagaggtgtcccacg
ccaacgctgtctcaggagtgcaaggcaagagggtcaatgttcaaagtggcctgtctcagt
gggaaccaccagcaccgtgacagtgtgcaagctgctaatagaagcatcagtgggagcagc
tcaaggataaaactggccccagcaggcacttttgctactggacttaactcctccacagtc
caggacttggcctcatctgctataaaaccaaacaaaaagctggaaaactgcaaactgcct
actttccagactcatttacgtcagccttctccgatcccctccttccccctaaagaggaag
catgaagcacttcagcaccaaaatgaaaacactcctcacaaagtttgcccaaccaggcat
cctccaaaatgggagccaagtcattcctcacaagaaaaggcaagagaaggaggagtccgt
gagtggaaaagaatcaggcccaaaacccctgtctctgaacactcagctgaaccaacagaa
ccacagactaaagccagtcaaactcaacaaagctgcagtaagatggaagaacgaggacat
gaatctactaaacagaccccagtctctgttaccttcaaaccacccaagcacaagcaggcc
aagcgtgggcctgaccgtgacagagttgggttaaaaatatcccatgaactgtcgagtgct
gatgaaccccaatccagagctggctacctgactgaaaccctgacatctgactccagagtg
agggattctgggaagctgaatatggacgagaagatgcagatgcttgagaaggctgggcgg
gccaaggcgctggtgctaaccatggtgtatcaggacggaaccactcagctagacccagaa
cagaagctcactccaccagtgtgtggcctcctcgtgctgatgaagaatgatctggactgc
agcgtgccagaggactctctcgggccaaacgacagtctggtctacttaaaactggagcaa
acacctgcatgggcccaacaacacacacatcagagccaggagctctttactagggatatg
ctgctacaggtactatcaaaatctcagctggtggtgtgctataaagccaaggatttgctt
cgtacaactctgcagttttacaaacaagacctcagctggaaacaagtggcaggctgtcat
atccaggacccacaggtgtcagcatggctactggatcctgcagatccctcctcttcctac
caggatctcctcaaaaaacacggcaaaagacccagtacagcacctgccctgggtaccaag
aaggttcctcaggtcatctcaggactcacttcgctctactcgcttaatatggagctatgc
tctaaactacagagccaggggctgtggaagctttattcagacatggagctgaacatgatc
cctgtcctggcagccatggagagccattgcatccatgtggacaaagaagctcttaagaga
acttcagacctgctggggactaagatgaagcagttggagcaggaggctcacagagcagca
gggcaaatattcctggtcaccagcaacactcagctacgaacagttctgtttgagaagctg
cgtctccacgagcgctgtgagaacaagaaacttcccaagaccgtcaacaaacagcagcag
tcaacatccgaagctgcattgttgcagctccaggacctgcaccctcttccaaagatcatt
ctggagtacagacaggttcacaagatcaagtccacttttgtcgatggaattctctcatgc
atgatgagcaagaactacatttcctctacatggtaccagacaagcgttgtgactgggaga
atctcggcgaaacagccaaacttccaggccctgccaagacagccgcttcaactcaccaag
aagcagtacatccaggggaaggaagaggaggtggtgactgttcaccctcgagccttgttc
atccctcagaagggctgctccttccttgctgcagacttctgccaggtggagctgcgtctg
ttggcccatctctcctccgaccctgagctgctccgcatcttcactaacccccaggccgac
gtctttaccatgctggcctctcagtggaagggagtgagtgagggtcaggtgacctctgag
gatcgggaacatgccaaacgcattgtctactctgttgtgtatggagcaggtcgtgagcgt
ctgtcagggatcttgggggtgagtgccgatcaggccaggcaattccaggacagcttcctc
cagacctacaaagaagtccaggtcttcatccagaggaccatccagctgtgccacaaacaa
ggttatgtgctctccatcatgggccgtcggcggaccctccctcacatcaactctccagat
tggggcatccgcatgcaggctgagagacaggctgtcaactttatggtccagggttctgct
gctgatctctgtaagatggccatgatcagaatcttcaacctggtctcctcctccacctcg
ctctctgccagactgatagcgcagctccatgatgagcttctgtatgaagtggaggactcc
caggtggagcactttgcagccttggtgaagcacaccatggagtccctgcagcatgtagac
catctgggcgtccatcttaaggtgaacaactgcaacctgaaagtaaacacattcagtttt
ataatagtgttgattgtcatgttcagcgatcgtactgtgcacatgctacacctttgccca
atcatcgacacactgtttttgtcgccattgcacccaagccaatggagatgtacacagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (71)   

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