KEGG   Leptothrix cholodnii: Lcho_1932
Entry
Lcho_1932         CDS       T00681                                 
Name
(GenBank) excinuclease ABC, C subunit
  KO
K03703  excinuclease ABC subunit C
Organism
lch  Leptothrix cholodnii
Pathway
lch03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lch00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Lcho_1932
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lch03400]
    Lcho_1932
DNA repair and recombination proteins [BR:lch03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Lcho_1932
SSDB
Motif
Pfam: UvrC_RNaseH_dom HHH_5 GIY-YIG HHH UVR HHH_2 HHH_3
Other DBs
NCBI-ProteinID: ACB34199
UniProt: B1Y0U1
Position
complement(2094439..2096517)
AA seq 692 aa
MNPATPETTDALAKLAGENLPDAVAAPAEETAAQAIDAAAARAQVWQRLLAEVASLPSLP
GVYRYFDAGNQLLYVGKALSLKKRVSSYFHKDHGGSRIGHMVGKIHRIETTVVRSEAEAL
LLENNLIKTQNPRFNILFRDDKSYPYLKLVTHEYPRVAYFRGAVDRRHRYFGPYPSAWAV
KEGIQLLQKVFRLRTCEDTVFANRTRPCLLYQIRRCSGPCVQAISAEAYAADVRNAVRFL
DGQAQEVLDGLQTQMMVAAEALAFEKAAEIRDQLGALSKVLHQQSMETGEAGDVDILAVK
VQGGRACVNLAMVRGGRHLGDRAYFPTHVDDAVALAHEEESAEPEAGTPSTPEPAPAASD
AAVGSSLGQAERAVLQAFLAQHYLGADCPPLLITSLPVDRDLIAALAGNAGHKVVAQHQP
REDRRAWLDMAIKGCELALARLLAEEGSQQARTRALVEALDLAPEGMDGGLDSLRIECFD
VSHTQGEATQASCVVFENHRMQPAQYRRFNIAGIQGGDDYAAMRQVLTRRYSKLAEAAQS
GEGRLPDLVLIDGGRGQVGVAKEVFQQLGLDLALIVGVEKGEGRKVGLEELVFADGREKV
YLGRDSAALMLVAQIRDEAHRFAITGMRARRASVRTGGSRLEDIAGIGPKKRARLLQRFG
GVRGVAQASVEDLASVEGISPELAEQIYQALR
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgaatccggccacccccgagaccaccgacgcactggccaagctggccggcgagaacctg
ccggacgccgttgccgcgcccgccgaggagactgcggcccaggccatcgacgccgccgct
gcgcgcgcgcaggtctggcagcgcctgctcgccgaggtggccagcctgccgagcctgccg
ggcgtctatcgctacttcgatgccggcaaccagctgctctacgtcggcaaggcgctgagc
ctgaagaagcgcgtctcgagctacttccacaaggaccacggcggcagccgaatcggccac
atggtcggcaagatccaccggatcgagaccaccgtggtgcgctcggaggccgaggccctg
ctgctcgaaaacaacctgatcaagacgcagaacccgcgcttcaacatcctgttccgggac
gacaagagctacccctacctgaagctggtgacgcacgagtacccgcgcgtggcgtatttc
cgcggtgcggtcgatcgccggcatcgctatttcgggccgtacccgagcgcctgggcggtc
aaggaaggcatccagctgctgcagaaggtgttccggctgcgcacctgcgaggacacggtg
ttcgccaaccgcacgcggccctgtctgctctaccagatccgccgctgctcgggcccttgc
gtgcaggccatcagcgccgaggcctacgccgccgacgtgcgcaacgccgtgcgctttctc
gacggccaggcgcaggaggtgctcgacggcctgcagacgcagatgatggtggcggccgag
gcgctggcgttcgagaaggcggccgagatccgcgaccagctcggcgcgctgtcgaaggtg
ctgcatcagcagtcgatggaaaccggcgaggccggcgatgtcgacatcctggccgtcaag
gtgcagggcgggcgggcctgcgtgaacctggcgatggtgcgcggcgggcgtcacctcggc
gaccgggcgtactttccgactcacgtcgatgacgccgtcgcgctggcgcacgaggaagaa
tccgcagagccggaagccggcacgccgtcgacccccgaaccggccccggctgcgtccgac
gctgcagtgggctccagcctcgggcaggccgagcgtgcggtgctgcaggcgttcctggcg
cagcactatctgggcgccgactgtccgcccctgctgatcaccagcctgccggtcgatcgc
gacctgatcgccgccctggccggcaacgccggccacaaggtggtggcccagcaccagccg
cgcgaagaccgccgcgcctggctcgacatggcgatcaagggctgcgagctggccctggcc
cggctgctggccgaagagggctcgcagcaggcgcgcacccgcgcgctggtcgaggcgctc
gacctcgcgcccgagggcatggacggcggtctcgacagcctgcgcatcgagtgtttcgac
gtcagccacacccagggcgaagcgacccaggcctcgtgcgtggtgttcgaaaaccaccgc
atgcagccggcgcagtaccggcgcttcaacatcgccggcatccagggcggcgacgactac
gcggcgatgcgccaggtgctgacgcgccgctattcgaagctggccgaagcggcccagtcg
ggcgagggccgcctgcccgatctggtgctcatcgatggcgggcgcggccaggtgggcgtc
gcgaaagaggtcttccagcagctcgggctcgatctggcactgatcgtcggggtcgagaaa
ggcgagggccgcaaggtcgggctcgaggaactggtgttcgccgacggccgcgagaaggtc
tacctcggccgcgattcggccgccctgatgctggtggcgcagatccgcgacgaggctcac
cgcttcgcgatcaccggcatgcgcgccaggcgggcctcggtgcgcaccggtggcagccgg
ctcgaagacatcgccggcatcgggccgaagaagcgcgcccggctgctgcagcgcttcggc
ggcgtgcgcggcgtggcgcaggcgagcgtcgaggatctggcctcggtcgagggcatctcg
cccgaactggccgagcagatctaccaggcgctgcgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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