KEGG   Latimeria chalumnae (coelacanth): 102348605
Entry
102348605         CDS       T02913                                 
Symbol
ABCA1
Name
(RefSeq) ATP binding cassette subfamily A member 1
  KO
K05641  ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm02010  ABC transporters
lcm04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    102348605 (ABCA1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    102348605 (ABCA1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:lcm02000]
    102348605 (ABCA1)
Transporters [BR:lcm02000]
 ABC transporters, eukaryotic type
  ABCA (ABC1) subfamily
   ABCA1, 2, 3, 4, 7, 12, 13 subgroups
    102348605 (ABCA1)
SSDB
Motif
Pfam: ABC_tran ABC2_membrane_3 AAA_21 DUF4162 SMC_N
Other DBs
NCBI-GeneID: 102348605
NCBI-ProteinID: XP_014350884
Ensembl: ENSLACG00000008714
Position
Un
AA seq 2267 aa
MTFWTQLGLLLWKNFTYRRRQTFQLLIEVAWPLLLFFILISVRLSHPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGESPGVVGNFNKSIISRLFLDVKRILLYGQKDT
SLKDLKKLFHSLKKLSDTSSGFKLKDFLIENETLSDVLLKNASLSPLAVAEILNADVDLK
QVFSSGFGVRLKDFCNVSRLEDFVVIADTSVATSIQSLICSWSVEQLNAVEQLFYSNLDF
VKPIKVRREFLNPESVKDVSKATYTLLQSLGALVKELETMKSWSDMRREVMFLASGNLTG
SPSQMYQAISRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEEDTTIFYDNSTTPYC
NDLMKNLESSPLSRMIWRALKPLLLGKILYTPDTPATRKVMVEVNKTFQELGVFRDLGGM
WKELAPKIWNFMENSKEVELLRSILKNKPSTSYLEQQLNNTSLTVAKISNFLSKHPADAQ
PLNGSIFTWRDALNETDQAIHTISGFMECINLDKLEAVSTEERLVNKSMELLEVRKFWAG
IVFTGIDSSNSQLPEHIKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYIWGGFAY
LQDVVEHAIIRALSGSEERTGVYLQQMPYPCYVDDIFLRVMSRSLPLFMTLAWIYSVAMI
IKGIVFEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAAFLVLILKKGNLLPYSDP
SVVFVYLSAFAVVTILNCFLISTLFSKANLAAACGGIIYFTLYLPYVLFVAWQDYVGFSL
KIFASLLSPVAFGFGCEYFALLEEQGIGVQWDNLFNNPHKDDSYNLTTSVCMMLFDTFLY
GVMTWYIEAVFPGQYGIPRPWYFPFTKSYWFGEENENVFHSQPVNKGTSEICFEEEPVHL
KLGVSIQSLVKIYRDGKKAAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTCG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLSEEQVKADMDQM
VLDVGLPHKRKAKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLL
KYRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCAGSSLYLKNHLGTGYYLTLVKKDLD
SSLSSCRNSSSTMSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLILKHVLEARL
VEDFGHELTYVLPYAAAKDGAFVELFHEIDDRLSDLGISSYGISDTTLEEIFLKVAEDSG
VDAETSDGTLPAPRRRAFGDHQSCLRPFTEDDAFDSNDSDGYPESRETDFLSGIDGKGSY
QEKGWTLTQQQFVALLWKRLLYARRSRKGFFAQVVLPAVFVCIALVFSLIVPPFGKYPSL
ELQPWMYEEQFTFISNDAPEDAGTQNLLGTLMNKPGFGTKCMKGNPDPDIPCSLEETEWT
TPPVSQSVIDIFLKGNWTMENPSPSCECSNEERKKMLPDCPAGAGGLPPPEKKQSPTVSL
QNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSTQALPPSDEVSDAITQ
TKKIFEITKEGAADRFLESLANFMKGLDTKANVKIWFNNKGWHAIGAFLNVMNNAILRSN
LPDGKNPSNYGITAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVVFLI
QERVSKAKHMQFISGVKPLIYWLANFTWDMCNYVVTATIVIIIFICFQQKSYVSSSNLPV
LALLLLLYGWSITPLMYPASFVFKIPSTAYVILTSVNLFIGINGSVATFVLELFTDNELN
SINEILKSVFLVFPHFCLGRGLIDMVKNQAMADALERFGENRFISPLSWNLVGRNLFAMA
VEGLAFFIITVLIQYRFFINTSILRPLTVKLPPVNDEDEDVAKERLRIMNGGGQSDILEI
KELTKVYSMKRKPAVDNLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSMVTRGVAFLNG
YSILSNIHEVHRNMGYCPQFDAINELLTGREHLEFYALLRGIPEKEVCKVAEWAVRKLGL
VKYAEKTAGNYSGGNRRKLSTAMSLIGGPPVLFLDEPTTGMDPKARRALWNCILSVIKEG
RSVVVTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRITGPNPDLNP
VEKFFEQAFPGIVLKEKHRTMLQYQLPSSQCSLARIFSILANNKERLRIEDYSISQTTLD
QVFVNFAKDQSDDDHSKDVSVNKNETVLDITLLSSFLQDDKAKESYV
NT seq 6804 nt   +upstreamnt  +downstreamnt
atgactttctggacgcagcttggactgctgctgtggaagaactttacctacagaaggaga
caaacatttcagctgttgattgaagtagcctggccactccttctcttcttcatactgatc
tcagtacgactttcacatcctccatatgaacaacatgaatgccatttccctaacaaggcg
atgccatcagctggaacactgccatgggttcaaggtatcatctgcaatgccaataatcct
tgcttccgctaccctacgcctggtgaatctcctggagttgttggaaactttaacaaatca
attatctctcgcctgttcttggatgtgaaaagaatactgttgtatggccaaaaggacacc
agcctgaaggacttgaagaaactctttcattcattgaagaagctctcagatactagttca
ggtttcaaacttaaagattttctgattgaaaatgaaactctttcagatgtccttcttaag
aatgcttctctatcaccattggcagttgctgagatactgaatgctgatgtagatctaaaa
caggttttctcaagtggtttcggagtgcgattgaaggatttctgtaatgtctccaggctg
gaagactttgttgttattgctgacacaagcgttgcgacatccatccaaagcttaatatgc
agctggtctgtggaacagctcaatgcagtagagcaactgttctactcgaaccttgacttt
gtgaagccaataaaggtgaggagagaattcttaaatcctgaatctgtcaaggatgtatct
aaagccacatataccctgttacagagtcttggagctcttgttaaagaactggaaacaatg
aagagctggagtgacatgaggagggaggtgatgtttttggccagtggaaatctaacaggg
tctccttctcagatgtaccaggcaatctccagaattgtatgtggacaccctgaaggagga
ggcctgaagatcaagtctctcaattggtatgaggacaacaattacaaagcattgtttgga
ggcaacagcactgaagaggatacaacaattttctatgacaactctactactccatactgc
aatgacttgatgaagaacttggaatccagccccctgtctcgtatgatttggagagcccta
aagcctctgctgcttggtaaaattctctacactcctgacactcctgctacacgcaaagtc
atggtagaggtaaacaaaacctttcaggagctgggtgtgttccgtgacctgggagggatg
tggaaggagctggcacccaagatctggaacttcatggagaacagcaaggaagtggagctg
ctcaggagcatactgaagaataagcccagcaccagctacttggagcagcagctaaataac
acgagcttgactgttgctaagatttccaatttcctatcaaaacacccagcagatgcccaa
cctctgaatggctcaatttttacctggagggatgcattaaatgaaactgaccaagccatc
catactatatcaggcttcatggagtgcataaacctggataagttggaagctgtgagcact
gaggaacgacttgtaaacaaatccatggagctgctggaagtgcgaaaattctgggcagga
attgtgtttacaggaattgactccagcaactcacaacttcctgagcacatcaagtacaag
atacgaatggacatagacaatgtggaaaggactaacaagattaaggatgggtactgggac
cctggtccccgagctgacccctttgaagacatgcgctatatctggggagggttcgcttac
ttgcaggatgtggtggaacatgctataatccgagctttgtcagggtctgaggagagaaca
ggagtctacttgcagcagatgccctacccctgctatgtagatgacatatttctgcgagtg
atgagccgctccttgcctctcttcatgaccttggcttggatctactctgtggctatgata
attaaaggcattgtatttgagaaggaagcacgcctgaaggaaaccatgaggatcatggga
ctagacaatggtatcctctggcttagctggttcattagcagcctcatccctctcctcatc
agtgcagctttcttggttctgatactgaagaaaggaaacttgctgccgtacagcgaccct
agtgtggtctttgtttacctgtctgcgtttgctgtggtcaccatcttgaattgcttcctc
atcagcaccctcttctcgaaggccaacctggctgcagcatgtggtgggatcatctacttc
accctctacctgccatacgtgctgtttgtagcctggcaggattacgtgggtttttctctc
aaaatttttgctagcctgctgtcgccagtggcatttgggtttggttgtgagtactttgca
ctccttgaagagcaggggattggtgttcaatgggacaacctctttaacaacccacacaaa
gatgatagctacaaccttactacctctgtctgtatgatgctatttgataccttcttgtat
ggagttatgacctggtacattgaagcagtatttccaggtcagtatggaattcccagaccc
tggtatttcccctttacaaagtcctactggttcggggaagagaatgaaaatgtgttccat
tctcaacctgtaaacaaaggaacatcagagatttgctttgaagaagagccggttcacctc
aaattgggagtgtcgatccagagcctggtcaaaatctaccgtgatgggaaaaaggctgct
gttgatggacttactcttggattttatgaaggacagattacttctttcctgggacataac
ggagctggaaaaaccactacaatgtctatcctcactggcttattcccacccacttgtggc
acagcctatattcttggtaaagatatccgctctgagctaagtgccataagacaaaacctg
ggagtgtgtccacaacacaatgtcctttttgacctgctgaccgtagaggaacatatctgg
ttctatgctcggctgaaaggactgtcagaggagcaggtgaaggcagatatggatcagatg
gttttggatgttggcctgcctcacaaaaggaaagcaaagacaagtcagctctcaggtggc
atgcagaggaagctgtcagtggccctagcctttgttggtggatcaaaggtagtgatttta
gatgaaccaactgcaggagtggacccttattcacgtaggggaatatgggagttactgctg
aaataccggcaaggccgtaccattatcctttctacacatcacatggatgaagcggatgtc
cttggagaccgaattgccataatatctcatggcaaactgtgctgtgcaggatcctccctc
tatctgaagaaccatctgggaacaggctactatctgaccctggtcaagaaagacttggac
tcttctctgagctcctgcagaaatagcagcagcaccatgtcttacctgaaaaaggaggac
agtgtctcacaaagtagttctgatgctggccttggcagtgatcatgaaagtgacaccttg
accatagatgtgtccgccatttccaacctcattctgaaacatgtacttgaggcacggctg
gtcgaggactttggtcatgagctgacttatgttttaccatatgccgctgcaaaagatgga
gcttttgtagaactgttccatgagattgatgacaggctgtctgacctgggaatttccagc
tatggcatatctgacacaacgctggaagaaatatttctgaaagttgctgaagacagtgga
gtggatgcagaaacatcagatggtacattgcctgccccgaggagacgagcctttggagac
caccagagctgccttagaccattcaccgaggatgatgcctttgattcgaatgactctgat
ggttatccagagtctcgagagactgacttcctcagtgggattgatgggaaaggctcatac
caggaaaaaggttggactctgacccagcagcagtttgtggccttgctgtggaagagactg
ctttatgccagacgcagcaggaaaggattttttgcccaggttgtgctgccagcagtattt
gtgtgcattgccctggtcttcagtctgatagtacctccttttggaaaatatcccagccta
gaactacaaccctggatgtatgaggagcagttcacatttattagcaatgatgcccctgaa
gatgcaggcactcagaacctattgggaactctaatgaacaagcctgggtttggcacaaaa
tgcatgaaaggaaacccagatccggacattccatgttcattggaagagacagagtggacc
actcctcctgtatcccagtccgtcatcgacatctttctcaaagggaactggacaatggaa
aatccttccccttcctgtgaatgcagtaatgaggaaagaaagaaaatgcttcccgattgc
cctgcaggggctggtggactaccacctcctgagaaaaaacagagccctacggtttctctt
cagaacctgactggcaggaacatatctgattacctggtgaagacctacgcacagatcatt
ggaaaaagtttaaagaacaagatctgggtaaatgaatttaggtatggtgggttttcattg
ggcgccaggagcactcaagctctaccacccagtgatgaggtcagtgatgccatcacgcaa
acgaagaagatctttgagataacaaaggagggtgcggcagaccggtttctggaaagcctt
gcaaacttcatgaaaggactggacacaaaagctaatgtaaagatttggttcaacaacaaa
ggctggcatgccattggagcattcctgaatgtgatgaacaatgctatcctgcgctctaac
ttaccagatggaaaaaatcccagcaactatgggatcacagccttcaatcaccctctcaac
ctcactaaggaacagctttcccaagttgccctaatgaccacttcagtagatgttcttgtg
tccatctgtgtgatcttcgccatgtcttttgtaccagccagctttgtggtgttcctgatc
caagagagggtcagcaaagccaaacacatgcagtttatcagtggtgtaaagccacttatc
tactggttggcaaacttcacctgggatatgtgcaattatgtagtcacagccaccatcgtc
atcatcatcttcatctgctttcaacaaaaatcctatgtttcttcctccaatttgccagtc
ctggcccttctgctcttgctttatgggtggtccattactcctctaatgtacccagcatcc
tttgtgtttaagattcctagtactgcatatgtgatactaacaagtgtaaacctcttcatt
gggattaacggcagtgttgcaacctttgtacttgaactcttcacagacaatgaactgaac
agcattaatgaaatcctaaagtcagtgttcctggtctttccgcatttctgcttgggacga
gggttgatagacatggtgaaaaatcaggccatggctgatgctctggaaagatttggtgag
aatcgtttcatctcccctctttcctggaatctagttgggagaaacctgtttgctatggct
gtggagggtttagccttcttcatcatcacagttttgattcagtataggttcttcatcaac
acaagcattttgaggcccctgactgtaaaacttcctccagtgaatgatgaggatgaagat
gtggctaaagaacgacttcgaataatgaatggtgggggacaaagtgacatcttggaaatt
aaggagctaactaaggtttacagtatgaaaagaaaaccagctgttgacaatctctgtgtt
ggaatacctcctggagagtgctttgggctattgggagtgaatggtgctggcaaaacctca
accttcaagatgttaacaggagacagtatggttaccagaggagttgctttcctaaatgga
tacagcattttatctaacattcatgaagtccatcggaacatgggctactgcccccagttt
gatgccatcaatgagctgcttactggaagggaacatctggagttctatgctctgttacgt
ggcatcccagagaaagaagtctgcaaggttgctgaatgggcagtccgtaaattggggttg
gtgaagtatgcagaaaaaacagctggaaattacagtggaggaaaccgccgcaaactctct
accgccatgtccctgattgggggacctcctgttttgttcctggatgagcctacaacggga
atggatccaaaagctcgacgggcgttatggaactgtattctttctgtcatcaaggaggga
cgatcagtagtggtaacatcacacagcatggaggagtgtgaagccctctgtactcgaatg
gccatcatggtaaatggcaggttcagatgtttgggcagtgtgcaacatctgaaaaacagg
tttggagatggttatacaatagtagtacgaataacggggcctaacccagacctgaaccct
gtggagaagttctttgagcaagcttttcctggcattgtgctgaaggagaaacatcggact
atgctccaatatcaacttccttcctcacagtgttccttggccagaatatttagcattctg
gccaataataaggagcgactccgaatagaagactactccatttctcagactacactcgac
caagtgtttgtaaattttgccaaggaccaaagtgatgatgaccactcaaaggatgtttct
gtgaacaaaaatgagacagtattagacattacactccttagttcatttttacaagatgac
aaggcaaaagaaagttatgtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (75)   

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