KEGG   Latimeria chalumnae (coelacanth): 102359475
Entry
102359475         CDS       T02913                                 
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
  KO
K13126  polyadenylate-binding protein
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03015  mRNA surveillance pathway
lcm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102359475 (PABPC1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102359475 (PABPC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102359475 (PABPC1)
   03041 Spliceosome [BR:lcm03041]
    102359475 (PABPC1)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     102359475 (PABPC1)
   mRNA cycle factors
    Stress granule specific factors
     102359475 (PABPC1)
Spliceosome [BR:lcm03041]
 Complex C
  Other components
   Complex C specific factors
    102359475 (PABPC1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 102359475
NCBI-ProteinID: XP_006012045
Ensembl: ENSLACG00000004395
UniProt: H3A5M2
Position
Un
AA seq 637 aa
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKEIFGKYGPALSVKVMTDDSGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWTAQGARPHPFQNMPSAIRQTAPRPPAFSTMRPASSQVPRVMST
QRVANTATQTMGPRPTAAAAAAASGVRTVPQYKYAAGVRNPQQHLNAQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNATGVPNV
NT seq 1914 nt   +upstreamnt  +downstreamnt
atgaacccaagtgctccgagttatccgatggcctccttgtatgtgggtgatcttcacccg
gatgtgaccgaggcaatgctgtatgagaagttcagtcccgctggccccatcctttccatc
agggtgtgcagagacatgatcacccgtagatcgctaggatacgcatatgttaacttccag
caaccggctgatgctgagcgtgctttggataccatgaactttgatgtcatcaagggtaag
cctgtgcgtatcatgtggtcccagcgtgacccgtctttacgtaagagtggagttggaaac
atcttcatcaaaaacttggataaatctattgacaacaaagcgctgtatgacactttctca
gcttttggcaatatcctttcttgtaaggtggtgtgtgatgaaaatggatcaaaaggctat
gggtttgttcattttgagacacaggaagctgctgaacgagctattgaaaaaatgaatggc
atgcttctcaatgatcgcaaagtctttgttggccgtttcaaatcacgcaaagaacgtgaa
gctgagcttggagctagagcaaaggagtttacaaatgtttacataaagaattttggagaa
gacatggatgatgagaggctaaaagagatctttggtaaatatggaccagctctgagtgta
aaagttatgactgatgacagtggaaaatccaaaggctttggatttgtcagctttgagaga
catgaagatgcacaaaaagctgtggatgaaatgaatggtaaggagctcaatgggaagcag
atctatgttggccgtgctcagaaaaaagtggagagacaaactgaactaaagcgtaaattt
gaacagatgaagcaagaccgaatcaccaggtaccaaggtgtcaacctttatgtgaaaaat
ctggatgatggcattgatgatgagcgtcttcgcaaagaattttcaccatttggtaccatt
actagtgctaaggtgatgatggagggtggacgcagtaaaggatttgggtttgtgtgcttt
tcttccccagaagaggccacaaaagctgtgactgaaatgaatggtagaattgttgccact
aagccactgtatgtagctctggctcaacgcaaagaggagcgtcaggctcacttgaccaac
cagtatatgcagagaatggcaagtgttagggcagtacctaaccccgttatcaacccgtat
cagccagcacctccttctggatatttcatggcagctattccacaggctcaaaaccgtgca
gcatattaccctactagccaacttgctcagctcagaccaagccctcgctggactgctcag
ggtgccagacctcatcccttccagaacatgcccagtgctatccggcaaacagctcctcga
ccaccagcgtttagcactatgagaccagcttcttctcaggtgccacgagtcatgtccacc
cagcgagttgccaacacagccactcagacaatgggtcctcgtcccaccgccgctgctgca
gctgctgcttctggtgtgcgtacagttcctcagtacaaatatgcagcgggtgtacgcaat
cctcagcaacatctcaatgcacagcctcaagttgctatgcagcagcctgctgtccatgta
caaggtcaggaaccattgactgcttccatgttggcttctgcccctccccaagagcaaaaa
cagatgttgggtgaacgcttgttcccactgattcaggctatgcaccctagtctggctggt
aaaattactggaatgcttctggagattgataactcagagttgctccatatgcttgagtct
ccagaaagtctgcgctccaaagttgatgaagctgtggcagtactacaagcccaccaagct
aaagaagctgctcagaaggcagtgaacaatgctacaggtgttccaaatgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (86)   

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