KEGG   Latimeria chalumnae (coelacanth): 102364040
Entry
102364040         CDS       T02913                                 
Symbol
TNPO1
Name
(RefSeq) transportin 1
  KO
K18752  transportin-1
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102364040 (TNPO1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102364040 (TNPO1)
   03009 Ribosome biogenesis [BR:lcm03009]
    102364040 (TNPO1)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102364040 (TNPO1)
Ribosome biogenesis [BR:lcm03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    102364040 (TNPO1)
  Pre-60S particles
    102364040 (TNPO1)
SSDB
Motif
Pfam: HEAT_EZ HEAT HEAT_2 Vac14_Fab1_bd Arm IBN_N Cnd1 PDS5 Adaptin_N MMS19_C CEP104-like_TOG UNC45-central Dopey_N SCD RTP1_C1 DUF3689
Other DBs
NCBI-GeneID: 102364040
NCBI-ProteinID: XP_014345580
Ensembl: ENSLACG00000012199
Position
Un
AA seq 890 aa
MEFEWKPDEQGLQQILQLLRESQSPDTSTQRSVQQKLEQLNQFPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFHNFPNGVTSFIKSECLKNIGDSSPLIRATVGILITTIASQ
GELQNWPDLLPKLCGLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHNSPKIRSHAIACVNQFIISRTQALMLHIDAFMENLFVLAADEESEVRKNVCRALV
MLLEVRMDRLLPHMHNIIEYMLQRTQDQDESVALEACEFWLTLAEQPICKDVLCGHLTKL
IPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIRPRFHRSRTVAQQHENDGVEEEDDD
DDDLDDDDTISDWNLRKCSAAALDVLANVFRDELLPHILPLLKELLFHPDWAIKESGILV
LGAIAEGCMQGMIPYLPELIPHLILCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVKLVQNTLTQVLCHNAQPEQYESPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILQLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPVLGTNLNPE
FISVCNNATWAIGEISIQMGLEMQPYVALVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVVQDFIFFCDAVA
SWISPKEDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAYYGV
NT seq 2673 nt   +upstreamnt  +downstreamnt
atggagtttgagtggaaacccgacgagcaaggacttcagcaaattttacagctgctcaga
gaatctcagtccccagatacctccacccagagatccgtccagcaaaaattggagcagctg
aaccagttcccagatttcaataactacttgatttttgtcctgacaaagttgaaatcagaa
gatgagcctacgcgttctctgagtggtctaatactgaagaataatgtgaaagcacatttt
cacaatttccccaatggggtaaccagctttataaaaagtgaatgtctaaaaaatattgga
gactcttcgccgttaattagagccactgtgggtattctgatcacaactattgcttcccaa
ggagagttacaaaactggccagatctcttaccaaagctgtgtggtctgctggattctgaa
gattacaatacctgtgagggagcatttggtgcccttcagaaaatttgcgaagattctgct
gaaattttggacagcgatgtcctagacagaccccttaatatcatgattcccaagttcctg
cagttcttcaagcacaatagccctaagatacgatcccatgcaattgcttgtgtcaatcag
ttcatcatcagtaggacacaggcacttatgttacacattgatgcctttatggagaatctg
tttgtgctggcagctgacgaagaatcagaagtgcgaaaaaatgtgtgccgtgcgctggtg
atgctgcttgaggttcgaatggaccgactgcttccacatatgcacaacattattgagtac
atgctacagagaacgcaagatcaagatgagagtgtagctttggaggcttgtgagttttgg
ttgactttggctgagcaaccaatctgtaaagatgtcctctgtgggcaccttacaaaacta
atccccattttggtaaatggtatgaagtattctgaaatagacataatcttacttaaggga
gatgttgaagaagatgaggctgttcctgacagcgagcaagatatccgtccacgtttccat
cgatctcgaacggttgctcagcagcacgagaacgatggggttgaggaagaagacgatgat
gacgacgaccttgatgatgatgacactatttctgattggaatttacggaagtgttctgct
gctgcgttggatgtcctcgctaatgtgtttcgtgatgaactcttgccacacattctgcca
cttttgaaagagttgctttttcacccagattgggcgatcaaagaatcgggcattttggtt
ctaggagcaattgctgaaggttgcatgcagggcatgattccataccttccagagctcatc
ccacacctcattctgtgcctgtcggacaagaaggctcttgtacgctccattacatgctgg
acccttagccgctatgctcactgggtggtaagccagcccccagacacctatttaaagcca
ttgatgacggagctattgaagcgaatattggacagcaacaagagagtacaggaggcagct
tgcagtgcctttgctactctggaagaagaagcttgtacagagttggtgccctaccttgct
tacatacttgatacattggtttttgcatttagcaaataccagcataaaaacctgcttata
ctgtatgacgccataggaacactggcagactcagttggacaccatttaaacaagccggag
tatatccaaatgctgatgcctccactcattcagaaatggaatatgctaaaagatgaagat
aaagaccttttcccattacttgagtgcctatcctcggttgccactgctctacagtctggc
ttccttccatactgtgaacctgtctaccagcgttgtgttaagctagtacagaatacactc
acacaagtcttgtgtcacaatgctcaaccagaacagtatgagtcaccagataaagatttc
atgattgtggcccttgacctgttgagtggtctggctgaaggacttggaggcaacatagaa
cagctggtggcacgcagcaatatccttcagttaatgtaccagtgcatgcaggataagatg
ccagaggtacgacagagttcttttgccttgttaggtgacctgacaaaggcatgttttcag
catgttaaaccttgcattgctgatttcatgccagttttgggcacaaatttgaacccggag
tttatttctgtgtgcaacaatgctacatgggcaataggcgaaatttccattcagatgggc
ttggaaatgcagccctacgttgctctagtgttgcaccaacttgtggagatcatcaacaga
cccaacacaccaaagacactattggaaaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgcacctcc
cttcgcaacataagggacaatgaagaaaaagattcagcattccgtgggatttgtactatg
atcagtgttaaccccagtggagttgttcaggatttcatctttttttgtgatgctgtggca
tcctggattagcccaaaagaggatcttcgggacatgttctgtaagattcttcatggattc
aaaaatcaagtgggtgatgagaactggagacgtttctctgaccagttccctcttcccctg
aaggagcgccttgcagcttactatggagtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (16)   
   Pfam (16)   
All databases (42)   

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