KEGG   Larimichthys crocea (large yellow croaker): 104926303
Entry
104926303         CDS       T04659                                 
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03013  Nucleocytoplasmic transport
lco03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104926303 (upf3a)
   03015 mRNA surveillance pathway
    104926303 (upf3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104926303 (upf3a)
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     104926303 (upf3a)
   mRNA cycle factors
    P-body specific factors
     104926303 (upf3a)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 104926303
NCBI-ProteinID: XP_010738428
UniProt: A0A6G0J607
Position
XVIII:complement(18769484..18776265)
AA seq 468 aa
MRSEKDQMTVGKEKSVVEIQFRDIPREQDNTPGNAKQKEEKKEVFTKVVLRRLPPNLSKE
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKSPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDVGETDRGKWEKAGGQMKSK
DSKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDGGDGKMGKEDREELGNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSTGKGYDCIPAGHSPEPGTEHCYEVVAMATGLEKGFEKSKDEQ
NT seq 1407 nt   +upstreamnt  +downstreamnt
atgaggtctgaaaaggaccagatgaccgtgggcaaggagaagagcgtcgtggagatccag
ttcagagacatcccgagggagcaggacaacactccgggcaacgccaagcagaaagaggag
aagaaagaggttttcaccaaggtggtgcttcgaaggcttccgcctaacctgtcaaaggag
cagctggaggaacagctcagcccgcttccatcctatgactatttcgagttctttccagcc
gatcaaagtctttatccacacctgttctccagagcgtacatcaactttaaaagccctgaa
gatatcctgctgttcagggaccgattcgatggttatgtcttcattgacaacaagggccag
gagtatcctgcagtagtagagttcgcccccttccagaaaatctccaagaagaagctaaaa
aagaaagatgccaaggccgggagcattgaagaagacccagaatataagcggttcttggag
aattactcctgtgacgaggagaagtctatggccaaccctgagactctgctgggagagata
gaggccaagaccagagagctcatcgccaaacggacaacaccgctgttggagtacatcaaa
aataagaaaattgagaaacagagaataagggaagagaagagagaggagaggagacgcaga
gagcttgaaaagaaacggcaaagggaggaagagaagaggaagcgacgggaggaggagagg
cgcaaacggaaagaagccgagaagcagaagaagctgtctgacaaagacatcaaaattaag
ctcctgaagaagagcgacagggacgacgatgtggattcagaccgaatgaaggacaaaagt
gacgtcggggagacagacagaggcaaatgggagaaagctggaggacaaatgaagtcaaag
gactccaaggaaaaaggtcagcctgagagtgacaaagagcagagagagcagcacggccgc
aggcagagagataaggaccaccgcgggaaagacgaggagaggaagcgacagcgacaccac
tacgagttcgacaagtttatgaggcgcaaagatgagaccaaatgggggaagggctactgc
caggaccgagccaagaaagagggtcaccatcatggctactcttactgtcctgacggtggt
gatgggaaaatggggaaggaggacagggaggagctgggtaacaggaaggaacgcctccga
aacaaggtgagcgagaaggaccgtccagccatgcagctctatcagccaggcgcacgcaac
aggaagcgcatgagctccacgggcaaaggctacgactgcatccccgcgggccactcgccc
gaacccgggacggagcactgctatgaggtggtcgctatggcgacggggctggagaaaggg
ttcgagaagagcaaagatgaacagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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