KEGG   Larimichthys crocea (large yellow croaker): 104928451
Entry
104928451         CDS       T04659                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco04510  Focal adhesion
lco04512  ECM-receptor interaction
lco04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104928451 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    104928451 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104928451 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lco04147]
    104928451 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:lco00536]
    104928451 (col4a1)
Exosome [BR:lco04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   104928451 (col4a1)
Glycosaminoglycan binding proteins [BR:lco00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104928451 (col4a1)
SSDB
Motif
Pfam: Collagen C4 Cry1Ac_D5
Other DBs
NCBI-GeneID: 104928451
NCBI-ProteinID: XP_010741043
Position
XVIII:complement(17441267..17478883)
AA seq 1640 aa
MLLPSGTLLLLAALYSSVDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGPMGSKGDVGVPGAPGLKGVRGPPGRAGFPGNPGLPGINGNDGPQGLPGIPGCN
GTKGDRGRDGAFGIPGLQGPPGIPGIPGMKGDPGGVIGIVPLKGDRGFPGTPGLHGPSGP
PGPIGPPGPRGYQGPKGDPGIPGPPGEKGDRLAFVSEKGEKGDQGVRGPPGPPGGPQGVE
GKTTIYLPGPQGETGFRGDKGEKGFCIPHLPGIKGEAGPPGQRGKPGKDGDDGLKGEKGF
TGAPGYPGSQGEKGEKGPPGHGTGAPGDPGPPGFPGLQGEKGFPGPPGEAGPAGQNIEGP
RGERGQKGDLGQKGDRGLEGESLVGPPGQPGLPGPPGLPGTPAKPTDCQSIQKGSPGPPG
PQGLRGEEGQKGDRGDTCVQCESSGPPGLPGPIGPKGDRGPPGPVGSKGDKGQTGTPGQP
GRTGSQGDPGLMGAPGAVGEPGDIFVAPGLKGDKGLPGPTGTPGLPGLDGQPGREGLPGI
PGLKGEPAKEGIKGERGPDGDPGFTGPQGERGPPGVPGFGRPGEPGEKGSAGRAGIPGAP
GVPGTKGEPGTGVSSPGAKGEPGVQGETGRPGLPGDRGLAGDPGLPGFPGQKGDPGQPGI
GLPGPTGPKGNSGIPGAPGLPGDRGKPGPDGLTGQSGSPGQKGEPGRGLPGQKGLQGNPG
ITGFPGEKGGIGLPGIPGREGHTGPQGPQGVKGEVGAPGPPGLVGLPGAPGKGSPGAPGP
QGPPGEPGPFGIEGIKGEKGYPGPSGLDMPGPQGETGAPGFPGMPGYKGLPGPPGLAGRD
GQIGNQGPKGEMGVIGTPGVPGFPGPPGTPGNPGARGDPGFTGSRGDSGEPGPKGERGDR
GLQGPPGNMSKVEMEHMKGDKGDIGDRGNPGLTGQKGFRGLPGDPGMPGKDGEPGSPGQP
GEKGDSGFPGEPGRMGQTGQKGSVGEMGIPGPVGPKGTKGDIGTAGHPGFRGEDGQKGDK
GLAGEPGIGIPGLPGEKGQTGQPGFPGIPGEKGFRGHEGMPGKPGLQGSKGDKGSIGYTG
QPGRPGEKGTPGLPGSSGEPGREGRPGEGGLQGPPGPPGEKGEPGVDGIPGSSGDKGVPG
IPGRGFPGPPGALGVKGDKGSTGFPGTPGHPGIPGFKGDKGFPGLQGPQGEPGERGHPGI
SLDGPKGDKGETGLPGEAGVTGEPGPAGVPGRTGLQGEKGDQGNPGFQGETGHKGDPGSS
GLPGHPGLPGIDGHKGERGLQGVPGFPGTKGIVGDIGVKGELGDRGFPGEKGNDGPPGQP
GPHTFIKGDIGFPGIQGLPGPQGPSGFPGQKGQLGMTGIQGPKGEDGQPGWNGQPGGKGE
PGLPGPQGPRGYPGPPGPDGVPGQVGQPGPSSMDHGFLVTRHSQSVEVPLCPEGTTPIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGQSIKPFISRCAVCEAPAMVIAIHSQTIMIPPCPHGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPAT
LKAGSLRTHISRCQVCMKRT
NT seq 4923 nt   +upstreamnt  +downstreamnt
atgctgttaccgtccggcaccctgttactgctggcggctctctactcaagtgtagacctg
acgggggctgagggttgtgggacctcgtgtggaaaatgcgactgcagtggtgtgaaagga
gcaaagggtgagcgcggatttccaggtcttcaaggtaatatgggattcccaggaatgcag
ggacctgaagggcctccagggccaatgggctccaagggagatgtgggcgtacctggagct
cctggactgaaaggcgtgcggggtcctcctggtcgggcaggcttcccaggaaacccagga
ctaccaggcatcaatggaaacgatggcccacaaggtcttccaggtatcccaggatgcaat
ggcactaaaggagacagaggaagggatggtgcttttggtattcccggtcttcaaggacct
cctggcatcccgggaattcctggaatgaagggtgaccctggtggtgtgatcggaattgtt
cctctgaaaggagacagaggattccccggcacgcctggattacatggaccaagtggacct
cctggacctatcggacctccaggaccacgtggctatcaaggacccaaaggagatcctggc
atccccggcccccccggagagaagggcgacaggctggcctttgtgagtgagaaaggagag
aagggtgatcagggagttcgtggcccacctggccctcctggaggacctcagggagtggaa
ggcaaaaccacaatatacctacctggaccacagggtgaaacaggatttcgtggtgacaaa
ggagaaaaaggcttttgcatcccgcatcttcctggtatcaaaggtgaagctggaccacct
gggcaacgaggtaaacctggcaaggatggagacgatggactaaagggagaaaaaggtttt
actggagctcctggataccctggctcccagggtgaaaagggagaaaaaggaccaccaggt
catggtactggggcccctggtgatccaggtcctcctggtttcccaggtttacaaggagaa
aaaggttttcctggtcctccgggagaggcaggtccagcgggtcaaaacattgaaggacct
cgtggtgagagaggtcagaagggagacttgggtcagaagggagacaggggtttggaagga
gagtctcttgttggacctccaggacaaccagggttacctggaccccctggactacctgga
acaccagctaaacctactgactgtcagagcattcagaaaggatctcctggcccacctgga
cctcaagggttacggggggaagagggacagaaaggtgacagaggagatacatgtgttcag
tgtgaaagttctggcccacctggactacctggccccatcggccctaaaggagaccgagga
cctcctgggcctgtaggcagcaagggagacaaaggtcaaactggcactcctggacaacct
ggaagaactggatctcaaggcgatcctggtttgatgggagcccccggtgctgttggtgag
ccaggggacattttcgtagctcctggtctgaagggcgacaaaggtctgcctggccccaca
ggaacaccggggctaccagggctggatggacagccagggagagaaggcctcccaggtata
cctggcctcaaaggagaacccgccaaagagggaataaagggtgagcgtggaccagatgga
gaccctggttttactgggcctcagggagagagggggccacctggcgtgccaggctttggt
cgacctggagagcctggagagaagggcagtgcaggaagagcaggaattcctggagctcct
ggtgtacctggtacaaaaggtgagccgggtacaggtgtgagcagtcctggagctaaggga
gaacctggagtacaaggagaaactggaagacctggacttccaggtgacagaggtctggcg
ggagacccagggttaccaggtttccctggacaaaagggtgatcccggacagcctggaatt
ggattacccggcccaactggtcctaaaggtaacagtggaattcctggagcccctggatta
ccaggagaccgaggaaaaccagggccggacggcttgaccggacaatctggttcacctgga
caaaaaggtgaaccaggacggggtcttccagggcaaaaaggtttgcagggcaatccagga
attacaggctttccaggagagaagggtggcattggactgcctggtattcctggacgagaa
ggccatacaggaccacaagggcctcagggagtcaaaggtgaggtgggagccccaggacca
cctggactggttggcttgccaggtgcaccaggaaaaggctcgcccggagctcccggacca
caaggaccacctggagagcctggaccattcggtattgaaggtataaaaggagaaaagggc
tatccaggtccttctggtctggacatgcctggtcctcagggagagacgggagcccccggg
ttcccaggaatgccgggttacaaaggactgccagggccaccaggcttagcaggcagggat
ggacagattggaaaccaaggtcctaaaggagaaatgggggttataggtacaccaggagta
ccgggctttcctggaccacctggtacacctggaaatcctggtgcaagaggtgatcctggt
tttactggatcaagaggtgatagtggagagcctggacctaaaggagaaaggggagatcga
ggtcttcaaggacctcctgggaacatgagcaaagttgagatggagcatatgaaaggggat
aagggagacattggagacagaggtaaccctgggctcactggacagaagggcttccgtgga
cttcctggagaccctggaatgccaggcaaagacggagagcctggatcacctggacaacca
ggtgaaaaaggagactccggtttccctggagaacctggcaggatgggacaaactggacag
aaaggcagtgtaggagagatgggaataccaggtccggtcggtccaaagggtactaaagga
gatattggtacagcgggacatcctggattcagaggcgaagatgggcagaaaggagacaag
ggtctggctggtgagccaggtattgggatcccaggacttccaggagaaaagggtcaaaca
ggtcagccaggattcccaggaattccaggagagaaaggtttcaggggtcatgagggtatg
cctggaaagccaggattgcaaggatccaaaggagacaaaggaagcatcgggtatacaggt
cagccaggtagaccaggtgagaagggcacccctgggctgccagggtcttcaggagaacct
ggtcgtgagggtcgtcccggtgaaggtggcttgcagggacctcctggtcctcctggagag
aagggagagcctggagttgacggcatccctggatcctcaggagacaaaggagttccaggt
atacctggacgaggtttccctgggccacctggggctcttggtgtcaaaggtgacaaaggt
agtactggtttccctggaactccaggtcatccaggcatccctggtttcaaaggtgataag
ggatttccaggcttgcagggaccccagggtgagccaggagaaagggggcacccgggtatc
tctctcgacggccctaagggagacaagggagaaacaggactgcccggagaagcaggagtc
acaggagaaccaggacccgctggtgtgccaggcagaaccggcctacagggagaaaaagga
gaccagggtaaccctggtttccagggggagactggacataagggtgatcctggaagttct
ggattacctggacaccctggtcttccaggcattgatggacataagggagagaggggattg
cagggtgtcccaggattcccaggtacaaagggtattgttggggacattggagtcaaagga
gaacttggagacagaggattcccaggagaaaagggcaatgacggtccccctggtcaacct
ggcccacacacctttatcaagggagacatcgggttcccagggattcaaggtttaccagga
ccccagggaccatctgggttccctggacagaaaggacagctaggtatgaccggtattcaa
gggccaaaaggcgaagatggccagcctggatggaacggtcagcccggaggcaaaggagag
cctggtctcccggggccgcaaggacccagaggataccctggccccccaggacctgacggt
gtaccaggtcaagtgggtcaacccggcccctcctccatggatcacgggttcctggtaacc
cgtcacagccaatcggtggaggttccactgtgccctgaaggaaccacgcccatatacgac
ggctactctttgctgtacgttcaaggcaacgaacgctctcatggacaggacttaggtacg
gcaggcagctgtctaaggaagttcagccccatgcccttcctgttctgtaacatcaacaat
gtgtgcaattttgcctcccgtaatgactactcctactggctcacctcccctgagcccatg
cccatgagcatggcacccatcactggtcaaagcatcaaacccttcatcagcaggtgtgcc
gtgtgtgaagccccggccatggtgatagccattcacagtcagaccatcatgatcccacca
tgtcctcacggctgggactctctatggattggctactcctttgtcatgcacaccagcgct
ggtgctgagggttcgggccaggctctggcctctcctggttcctgcctggaggagttccgc
agcgctccattcatcgagtgtcacggccgcgggacctgcaactactacgccaactcctac
agcttctggcttgccaccattgaagacaatgagatgtttacgaaacctgtcccagcaaca
ctaaaggcaggcagcctccgaacacacataagccgctgtcaggtgtgcatgaagaggaca
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (58)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (70)   

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