KEGG   Larimichthys crocea (large yellow croaker): 104931175
Entry
104931175         CDS       T04659                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    104931175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lco03000]
    104931175
   04121 Ubiquitin system [BR:lco04121]
    104931175
   03036 Chromosome and associated proteins [BR:lco03036]
    104931175
Enzymes [BR:lco01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     104931175
Transcription factors [BR:lco03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    104931175
Ubiquitin system [BR:lco04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     104931175
Chromosome and associated proteins [BR:lco03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    104931175
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     104931175
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD JmjC F-box Cupin_8 LRR_4
Other DBs
NCBI-GeneID: 104931175
NCBI-ProteinID: XP_027137807
Position
IX:complement(7433749..7458490)
AA seq 1396 aa
MAQAVETCAESGRRLRSICRRMYDENEDLSDVEEIANIRGFSVEEKLVSDSYSAKFVHLL
EGKDFSYEYVQREALKIPLIFKEKDGLGIRMPDPEFSVSEIKGLVGSRRSVDVMDVSTQK
GTEMSMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDQVDWVDNMWPPNL
KHSQTEATNIISEMKYPKVQRYCLMSVKGCYTDFHIDFGGTSVWYHVFKGRKVFWLVPPT
PHNLALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGG
NILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEISWYVLERYLHCLTKRSYLSQEIRKE
PVITDNETKANTESPSSDSRSQDMNEDSCETQVRDEQGDKSERVAQEGPCSPDNRRGQHL
RAVLSVDSEDSCNPGSTSLDFPQTPSDSPASESLSKWTHLTEFELSGLRTLVEKLESLPE
NKKCVPDGIENPQALLEDIKAVLKEHADDDPKLAISGVPVVYWPKKTIKPRPPNRPKPKM
AASPASAVKLSASRGTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCI
MRQCIAPVLPHTAVCLICGEAGKEDTVEDEEEKFNLMLMECSICNEIVHPNCLKVKDSNG
VVNDELPNCWECPKCNHAGKTGKASKQKRGPGFKYASNLPGSLLKEPRVNRDSKEEPDPP
MVATATVTALTTTSAVKRKAEREECPKRKEEEPPKKRPPLLSLDGTPRPRLEDNPLRKKR
KLFDTNDEPVIVKKKKKLSKLEDPLAPKLLRQIKIENDHGDEDDDQEDHDDDGFSLDRIH
VKEKNEYDDEDQEEDEEEEEEETVKKERDSSAEDKAKVLLSPLLRTPAVRESDQSSSNSP
RAGPSSESGDAQERSSVLLKARHQRRRLPNKELSKEFNQEIPKTEDCLSNQNHGSVKTED
SPANHNRRPLKNEDSVTNQNRKPLKTEDSTTNQSRRALKMEEGLTNQNRRPLKTEDSLAN
QNHRPIKSEPENEEHDQKPRWALNNGSSDLGDWLRHRGREVNEMPRGFSPLSWNRSTQIT
SICPRPLPCRSPPKCIQMERHVIRPPPISPPPDRLLLNDGEAHVMRREMWMAVFSHLTHR
DLCVCMRVCRTWNRWCCDKRLWKHINLNRCKSITPLMLSGIIRRQPAALDLSWTNISKKQ
LSWLINRLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTD
NRPGQLDNRSKLRNVEDLRLAGLDITDTSLRLIIRYMPSLSKLDLSYCNHVTDQSVNILT
AAGTTTRDSLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCDQFIAEMSV
SVQFELIEEKLLQKIS
NT seq 4191 nt   +upstreamnt  +downstreamnt
atggctcaggccgtggaaacgtgtgctgaatccggacgcaggctgcgctccatctgccgg
aggatgtacgacgaaaacgaggatctgtcagatgttgaagaaattgcgaacatcagaggg
ttcagtgtggaggaaaagctcgtcagtgacagctacagcgcaaagtttgtccacttactg
gagggcaaagacttctcttatgaatatgtgcaaagggaagctctgaagatcccactcatt
tttaaagagaaggatggactagggatcaggatgcctgatccggagttttcagttagtgaa
attaaaggcttagttggcagtcgtcgctctgtggatgtcatggacgtgagcactcagaag
ggcacagaaatgagcatggctcagtttgtccgttattatgagacaccagaggaagagcgg
gacaaactcttcaacgttatcagcttagagttcagccacactaagctggagaacctcatc
aagaggcccacagtggtggatcaagtggactgggtggacaacatgtggcctcctaatctg
aaacacagccaaacagaagccactaatataatctcagagatgaagtaccctaaagtgcaa
aggtattgtctcatgagtgtgaagggctgctacacagattttcacatcgatttcggggga
acctctgtttggtatcatgtattcaagggacggaaagtgttttggcttgtgcctccaacc
cctcataaccttgccctttatgaggactgggtcctgtcaggcaagcagagtgatatcttc
ctgggagaccgagctgatggatgccagagagtggagcttaagcaaggatacaccttcttc
atcccatctgggtggatccatgctgtttacactcccgaggacacactggtgtttggaggc
aacattctgcacagcttcaacattcctatgcagctcaccatccatgagatagagaacagg
actaaggttcattccaagttccgtttccctttctactatgagatcagctggtacgtcctg
gagaggtacctgcactgcctgaccaaacgatcctacctgtctcaggagattcgcaaagag
cctgtaataacagacaatgagacaaaggcaaacacagagagcccctcctctgactcaagg
agccaggacatgaacgaggactcgtgtgagactcaggtcagggatgagcagggtgacaaa
tcagagagagttgctcaggagggcccctgctctcccgacaatcggaggggccaacacctc
agagctgttttatctgttgattctgaggacagctgtaatcccggctccacctctctagat
tttccccaaaccccctctgactctccggcctcagagtctctgagtaaatggacgcatttg
accgagtttgaactgagcggactcaggacactagtcgagaagctggagtcgctgcctgaa
aataagaaatgcgtacctgatggaatagagaacccacaggcgctgctggaagacataaag
gctgtcttgaaagaacatgccgatgatgacccaaagttagcgatcagtggagttcctgtg
gtgtactggcctaagaaaactataaagccccggcctcccaaccggccgaaacctaagatg
gcagcttctcctgcctcagcagtcaagctgtcagccagtcggggaacatctggtgccagg
aggagaaggactcgctgtcggaagtgcgaggcatgcctgcggacggagtgtggagagtgc
cacttctgtaaagacatgaagaagtttggtgggccgggtcgtatgaagcagtcctgcatc
atgaggcagtgcattgcacctgtcctgcctcacacagcagtgtgtctcatctgtggagag
gcagggaaagaggacacagtggaggatgaggaagagaagtttaacctaatgctcatggag
tgctccatctgcaatgagattgttcatcctaactgtcttaaggtgaaagactcaaacgga
gtagtcaatgatgaattgccaaactgctgggagtgtccaaaatgcaaccatgctgggaaa
acagggaaagcctcaaagcaaaaaagggggccagggtttaaatatgcatcaaaccttcct
ggctcgctactgaaagaaccacgggtgaaccgtgattcaaaagaggagcctgacccgccg
atggtggctacagcaactgttaccgctttgactacgacatctgctgtgaagagaaaggca
gagcgggaagaatgcccaaagaggaaagaagaagagcctccaaagaaacgtccccccttg
ctgtctctggatggtacgccccgaccgagacttgaggacaacccactgaggaaaaaaagg
aaactttttgacaccaatgatgaacctgtaattgtgaaaaagaagaagaagctttctaag
ctggaggatcccttggctccgaagctgttgcggcaaataaagatcgagaatgatcacggt
gatgaagacgacgaccaggaggatcatgacgatgatggattttccttggacaggattcac
gtaaaggagaagaacgagtacgatgacgaggaccaagaagaagacgaggaggaagaggag
gaggagacggtgaaaaaggagagagacagcagtgcagaggacaaagccaaggtcttgtta
agtccactgctaagaacgccagctgtcagagaaagtgaccaatcctcctccaactctccc
agagctggaccaagcagcgaatcaggagacgctcaggagaggagctctgttttgctaaag
gctcgtcatcagcgccgacgcctccccaacaaagagctgagcaaagagttcaaccaggag
attcccaagacagaagactgcctgtccaaccagaaccacggatcagtgaagaccgaggac
agcccagccaatcacaaccgacggccactgaagaacgaggactctgtgaccaatcagaac
cgtaaaccactaaaaacagaggactcgaccactaatcagagccgcagggcccttaaaatg
gaggaaggtctgaccaatcaaaacagacggccactgaaaacagaggacagtctggccaat
caaaaccacaggcctataaaatccgagcctgagaacgaagaacacgaccaaaagccgagg
tgggctctcaataacggcagcagcgacttgggtgactggctgcgacacagagggcgcgag
gtgaacgagatgccgcgtggtttctcgccactcagctggaacagaagcacccaaatcacg
tctatatgtcctcgtccactcccctgcaggtcaccaccaaaatgtatccaaatggaacgc
cacgtgatccgtccccctcccatcagccccccgccagacagactgctcctgaacgacggc
gaagctcacgtgatgcgaagggagatgtggatggcggtattcagtcacctcactcacaga
gatctttgcgtttgcatgcgcgtgtgcaggacctggaacagatggtgctgtgacaagagg
ctttggaagcacatcaatctgaaccgctgcaagtccatcacacctctcatgctgagcggt
atcatccggaggcagccggcagctctggacctcagctggaccaacatctccaagaagcag
ctcagctggctcatcaacagactgccaggtctgcgtgtgctcctgctgtcaggatgctcc
tgggtggctgtctccgctctttgcacctccagctgtcctcttctgcgaactctggacgtt
cagtgggttgagggactaaaagatgcacagatgagggacctgctgtcgcctcctacagat
aacaggccaggtcagttagacaacaggagtaagctgcgtaacgtggaggacctgcgtctg
gcaggcttggatatcaccgacacgtctctgcgcctcatcatacgctacatgccttcgctg
tccaagctggacctcagctactgcaaccacgtcaccgaccagtctgtcaacatcctgact
gctgcagggacgaccaccagagactcgctcactgacatcaacctgtcagtctgtaacagg
gtcacggaccagtcgctgacctatttcaagcgctgtggaagcatatgtcacatcgacctg
cgatactgcaaacaggtgaccaaggaagggtgcgaccagttcattgcagagatgtccgtc
agcgtacagtttgaactgatagaagagaaactgctgcaaaagatcagttag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (8)   
   Pfam (8)   
All databases (75)   

Download RDF
DBGET integrated database retrieval system