KEGG   Larimichthys crocea (large yellow croaker): 104933696
Entry
104933696         CDS       T04659                                 
Name
(RefSeq) rano class II histocompatibility antigen, A beta chain isoform X1
  KO
K06752  MHC class II antigen
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco04145  Phagosome
lco04514  Cell adhesion molecules
lco04672  Intestinal immune network for IgA production
lco05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    104933696
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    104933696
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    104933696
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    104933696
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lco04147]
    104933696
Exosome [BR:lco04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   104933696
  Exosomal proteins of epithelial cells
   104933696
  Exosomal proteins of breast milk
   104933696
SSDB
Motif
Pfam: C1-set C2-set_2 MHC_II_beta Ig_3 DUF3953 DUF202
Other DBs
NCBI-GeneID: 104933696
NCBI-ProteinID: XP_019131040
Position
VI:21931273..21935242
AA seq 295 aa
MKRSLCLLFLCLFSSTSVDCATNGSGYFMTADFRCAMYSRERTHVEYLVDWHFNEEFVMQ
YNSTVGKWTGFTPGGMITASLFNGDFYDVQQRKVEKQLICVDHVDMIFNVTEESIAEPSV
TLVESTSSSKNAMLVCSAYDFYPKNIRLTWLMNGQEVTSGVTFSDVLTNGDWTYQVHSYL
EYTPSIRQDRVSCMVEHASLREPKIYHRDLNQSDRRLLIGGVCFLVLGAVFLSLGLMQYR
RKRGNGANADVLKSVLPRVVEVGYPCNGTDDLLEHPGVIGPAWSEVCHVDPRLWW
NT seq 888 nt   +upstreamnt  +downstreamnt
atgaaacgctccctgtgcctgctctttctgtgccttttctcttcgacatctgtggactgt
gccaccaatggatccggatacttcatgacagccgacttcaggtgcgccatgtactccaga
gagcgcacgcatgtggagtatctggtggactggcatttcaacgaagagtttgtgatgcag
tacaacagcacggttggcaaatggacgggcttcactccgggcgggatgatcactgcatct
ctgttcaatggagacttctacgacgtgcagcagagaaaagtggagaagcagctgatatgt
gtcgaccatgtcgatatgatattcaacgtgaccgaggaaagcattgctgagcccagcgtc
actctcgtggagtccaccagctccagtaaaaacgccatgctcgtgtgcagcgcctacgac
ttttaccccaaaaacatcaggctgacgtggctcatgaacgggcaggaagtgacctcgggc
gtgacctttagcgacgtgttgacaaacggggattggacctatcaggtccactcttacctg
gagtacacaccttcaatccgacaggacagagtcagctgtatggtggagcacgccagcctc
agggaaccaaagatttatcacagagacttaaatcagtcagataggaggctcttgattggt
ggagtttgttttctggtgttgggagcggtgtttctgtccttgggactgatgcagtacagg
agaaaacgaggaaatggagccaatgcagacgtgctaaaatctgtacttcctcgagtggtt
gaagttggatatccgtgtaacggtacagatgacttattagagcacccaggcgtcattggg
cccgcctggtctgaggtctgccatgttgatccacgtctatggtggtga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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