KEGG   Larimichthys crocea (large yellow croaker): 109141091
Entry
109141091         CDS       T04659                                 
Symbol
nhlrc1
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
  KO
K10602  E3 ubiquitin-protein ligase NHLRC1 [EC:2.3.2.27]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109141091 (nhlrc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lco04121]
    109141091 (nhlrc1)
Enzymes [BR:lco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109141091 (nhlrc1)
Ubiquitin system [BR:lco04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109141091 (nhlrc1)
SSDB
Motif
Pfam: NHL zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4_2 NBCH_WD40 zf-RING_4 DUF6383 Prok-RING_4
Other DBs
NCBI-GeneID: 109141091
NCBI-ProteinID: XP_019125822
Position
XIII:17870608..17872326
AA seq 409 aa
MAKTPGSPSRGSLSPERILREIQINLLECKVCFEKFSTQQREHRPQTLSCGHVLCRECIT
ALSHPLLRKLECPFCRQLCSIDSTSHCLVLTDLQELLLSYAPPHRPKGGLGLATSLTSAA
LHLCAAFGGWGTLINPTGIAVLGSSGTMVVVHDAEKPVVVFSSQGKKLQSFGQKGRASEE
ICYPVDVAVTPCGYVVVTDAGDKAVKVFTSRGKHVSTVKNSFKMPWGVDTNSCGHILVSD
VQAGTLSQVKVDYAHGLLQEHQTAISDLQHPKAVACCQVTGNIAVMEYLPHDTHPQGGQQ
HTRLRVFSKDFHLLYQTDSFSLTLQSMVKLNMSGVTFGRDGDVIVIDSNQGMIWSLGKLQ
NGPALTPLVGDHLVRPTGLVSLNNMLVVLDSGDHTVKIYSAKADAGPII
NT seq 1230 nt   +upstreamnt  +downstreamnt
atggcaaagactcctggttccccaagtcgtggcagcctgagtcctgagaggattctgaga
gagatccagatcaacttactggagtgtaaagtctgcttcgagaagttcagcactcagcag
agggagcacagaccacagactctttcctgtggccatgtactttgcagagaatgcatcacg
gctctgtcacaccctctcctgaggaagctggagtgcccgttctgtcgacagctgtgcagc
attgacagcacctcccactgcctggttcttactgacctgcaggagctgttgttgtcctat
gctcctcctcacaggccaaaaggaggccttggcttagccacaagtctgacatccgcagct
ctgcacctctgtgcagcttttggtgggtgggggactcttatcaacccaactgggatagct
gttttaggctcttcagggacgatggtagtggtgcatgatgcagagaagccagtggtggtg
ttcagctcacagggcaagaagctgcagagttttgggcaaaaaggacgagccagtgaggag
atctgttacccggtggatgtggcagtgactccctgtggttatgtggtggtgactgatgca
ggcgataaagctgtgaaggttttcacgtccagggggaagcatgtatcgacggtcaaaaat
tctttcaagatgccctggggtgtagacacaaacagctgtgggcacatcctggtatcggac
gtccaggctggcacactgtcccaggtaaaagtggactatgctcatggtctccttcaggag
catcaaacagccatttcagacctccagcatccaaaagcagtggcgtgctgtcaggtaact
gggaacatagcagtgatggagtatttacctcatgacacacatccacaaggggggcaacaa
cacacaaggctgagagtgttttcaaaagacttccacctcctttatcagaccgacagtttc
agcctgaccctgcagtccatggtgaagctaaacatgtcaggcgtgacctttggcagagat
ggagatgtgattgtgattgactccaatcaggggatgatttggagtttggggaagcttcag
aatggcccagccctcactcctctggtgggagaccaccttgtccgaccgactggactggtg
tcactgaacaacatgctggtcgttttggacagcggagaccacacagtgaagatttattct
gctaaagctgatgcagggcccatcatatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (34)   

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