KEGG   Lucilia cuprina (Australian sheep blowfly): 111675262
Entry
111675262         CDS       T06013                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
lcq  Lucilia cuprina (Australian sheep blowfly)
Pathway
lcq03020  RNA polymerase
lcq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lcq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111675262
  09124 Replication and repair
   03420 Nucleotide excision repair
    111675262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcq03021]
    111675262
   03400 DNA repair and recombination proteins [BR:lcq03400]
    111675262
Enzymes [BR:lcq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111675262
Transcription machinery [BR:lcq03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     111675262
DNA repair and recombination proteins [BR:lcq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111675262
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 DUF3137
Other DBs
NCBI-GeneID: 111675262
NCBI-ProteinID: XP_023291767
EnsemblRapid: LOC111675262
Position
3:35735078..35742834
AA seq 1891 aa
MATNDSKAPIRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVI
DRTSRCQTCAGNMTECPGHFGHIDLSKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPK
IKEIVMKTKGQPRKRLAYVYDLCKGKKICEGGEDMDMTKDGQPADPNKKPGHGGCGHYQP
SIRRTGLDLTAEWKHVNEDSQEKKMAITAERVWEILKHITDEECFIMGMDPKYARPDWMI
ITVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEGTGAAAHVIMENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFITREQVMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTV
KLSNKSFEKRFKFDWSNERYMRKVFTDEVIKELSESGNALPQLEVEWEQLCRDREALREI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDHL
SKQANENATLLFQCLVRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEENKF
QDEEEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDASAHAETD
PMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRYGIEIANTLGSSMLGGSGMFFGAVATPS
MSPPRTPWIQCGTPKYLSPSGQMSGMTPGGPSFSPSAASEASGMSPIWSPAHPGSSPSSP
GPAMSPFLSPSPNVSPPSYSPTSLNYTASSPGGASPSYSPLSPSYSPTSPVYASSSPRYS
STTPIFNPQSTGYLPSTSGYSPSSPVYSPTSNLQSSSPSYAGSGSNMYSPASAYSPTSSN
YSPNSPSYSPTSPSYSPSSPSYSPSSPCYSPTSPSYSPSSPTYTPVTPSYSPSSPNCSSS
PHYSPASPAYSQTGVKYSPTSPKYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPL
YSPASPQHSPANQYSPTGSSYSATSPRYSPNMSIYSPSSTKYSPSSPPTYTPTRNYSPAS
PMYSPTAPSHGYSPTSPAYSPSSPTYEESDD
NT seq 5676 nt   +upstreamnt  +downstreamnt
atggctactaatgattccaaagcgcctataaggcaagtaaaacgtgtgcaattcggtata
ttgtctccggatgaaattcgacgtatgtcagtcacagaaggcggtgtacagtttgccgaa
accatggaaggtggccgtcccaaattaggtggtcttatggatccccgtcaaggtgtcata
gatcgtacctcacgttgccaaacctgtgctggcaatatgacagaatgtcccggccatttc
ggccacattgacttgtctaaacctgtatttcatattggttttataacaaaaaccatcaag
attttaagatgtgtttgcttttattgttccaaaatgttggtatcacctcataatcctaaa
atcaaagaaattgttatgaaaacaaaaggacaaccgcgtaaacgtctggcttatgtttat
gatttgtgtaaaggtaaaaagatttgcgaaggtggtgaagatatggatatgacaaaagat
ggacaaccggctgatccgaataaaaaacctggtcatggtggttgcggtcattatcagcca
tcgattagaagaactggtttagatttgacagccgaatggaaacatgttaatgaagattca
caggagaaaaaaatggccataacagctgaacgagtttgggaaattctaaaacacattacc
gacgaagagtgcttcattatgggtatggatcccaaatatgcacgtcccgattggatgatt
atcactgtattacccgttccacccttggctgtacgtcctgccgttgtgatgtttggtgcc
gccaagaatcaggatgatttaacgcacaaactttccgatatcattaaggctaacaatgaa
ttacgtaaaaacgaaggcaccggtgctgcagctcatgttattatggaaaatataaaaatg
ttacaatttcatgtagccacacttgtagacaatgacatgcccggtatgccaagagctatg
caaaagtccggcaaacccctaaaagccattaaatcacgtctaaagggtaaagaaggtcgt
attcgtggtaatttgatgggaaaacgtgtagatttctcagcacgtactgtcattacaccc
gatcccaatttacgtattgatcaggtcggtgtaccacgatccattgcacagaatttaact
tttcccgaattggtaacaccttttaacatagatcgtatgcaggaattagtaagacgtggt
aattcacaatatcctggcgctaaatatattgtacgtgacaatggtgaacgtattgatttg
cgtttccatcccaaaccttctgatttacatttacaatgtggctataaagtagaacggcat
ttacgtgatgatgatttagttattttcaatcgtcagcccactttgcataaaatgagtatg
atgggtcatcgtgttaaggttttgccatggtcaacattccgtatgaacttgtcgtgtacc
tcaccgtataacgctgattttgacggtgatgaaatgaatttgcacgttccccaatcgatg
gagacgagagctgaggtggagaatattcacgttactccacgtcagattattacaccacag
gctaacaaacccgtcatgggtattgtgcaggatacactgacagccgtacgtaaaatgaca
aaacgtgatgtcttcattacacgcgaacaggtcatgaacttacttatgttcttgcccact
tgggatggtaaaatgccacaaccgtgtattttaaaacccaaacctctatggaccggtaaa
caaatcttcacccttatcattcctggcaacgtaaacatgatacgtactcactctacacat
ccggacgatgaagatgatggtccgtataaatggatttcacccggtgacacaaaagtcatg
gtagaacatggtgaattgattatgggtattctgtgtaagaaaaccctgggtacatcagct
ggttctctgttgcatattgtctttttggaattgggtcatgagattgctggacgtttttat
ggtaatattcagactgtcattaataattggttgctgttggagggtcacagtatcggtatt
ggtgatacaattgccgatcctcagacttataatgaaattcagatggccattaagaaagcc
aaagacgatgtcatcaacgttattcaaaaggctcacaacatggaattggaacctacaccc
ggtaatacattgcgtcagactttcgagaatcaagtaaatcgtattttgaacgatgctcgt
gacaaaactggtggttccgctaagaaatctcttactgaatacaacaatctaaaggctatg
gtggtgtctggctctaagggttccaacattaatatttcccaggttattgcttgtgtaggg
caacagaacgtcgaaggtaaacgtataccttatggttttcgcaagcgtactttgccacat
ttcattaaagacgattacggtcctgaatctagaggtttcgtcgaaaattcatatctagcc
ggtttgactccatccgaattctatttccacgctatgggtggtcgtgaaggtcttattgat
acagctgtaaaaactgctgaaactggttatatccagcgtcgtcttataaaggctatggaa
tctgtaatggttaattatgatggtactgtgcgtaattctgtgggtcaacttattcagttg
cgttacggtgaggacggtttggcaggtgaaacggtagagtttcagaatcttcctactgtt
aagttgtcgaataagtctttcgaaaaacgtttcaaattcgactggtccaatgagcgctac
atgcgcaaagtctttacagatgaggttattaaggagctgagtgaaagtggcaatgcttta
cctcaactagaggtggaatgggaacaattgtgtcgtgatcgtgaggctttaagagaaatt
ttccctaatggtgattccaaagttgtattgccttgcaatttacaaagaatgatttggaat
gtacaaaagattttccatatcaataaaagaatgcccacagatttgtctccgctacgtgtt
attaatggtgtgcgagatcttttgcaacgctgtgttattgtggtgggcaatgatcatttg
tccaaacaggccaatgaaaacgctactttattgttccagtgtttggtgcgttccactttg
tgtaccaaatatgtagcagaagaattccgtttgtccactgaagcttttgagtggttgatt
ggtgaaattgagactagatttcaacaggctcaagctaatcccggtgaaatggtgggtgcc
ttggctgcccagagtttgggtgagcctgccacacagatgacactgaacactttccatttt
gctggtgtatcctcaaagaacgtaaccctcggtgtaccacgtcttaaggaaattatcaat
atttccaagaaacctaaagctccctctctaacggtgttcttgacgggtggtgctgcccgt
gatgctgaaaaggctaagaatgttttatgtcgtttggaacatactactctacgtaaggtt
acagccaataccgctatctactatgatcctgatcctcaacgtactgttatagcagaggat
caagaattcgttaatgtttactatgaaatgcctgattttgatcccacacgcatttcaccc
tggttgctgcgtattgaactcgatcgcaagagaatgacagataagaaattaactatggaa
cagattgctgaaaagatcaacgccggttttggtgatgatcttaattgtattttcaatgat
gacaacgccgacaaattggtcttgcgtatacgtatcatgaacaatgaggaaaacaaattc
caagatgaagaggaagcagtagacaaaatggaagatgatatgttcttacgttgtatcgaa
gctaatatgttgtccgacatgacactgcagggcatagaagccattggcaaagtgtacatg
catttgccacaaacggacagtaagaaacgtattatcatcacagagacgggagaatttaag
gctatcggagaatggttgctggaaactgatggtacctctatgatgaaggtactctctgaa
cgtgatgttgatcccgtacgtacttcatccaatgatatttgtgaaattttccaagtactt
ggcattgaagctgtgcgtaagtccgtggaaaaggaaatgaacgctgtgctacagttttac
ggtttgtatgtaaactatcgtcatttggccttgttgtgtgacgtaatgacagccaagggt
catttgatggccatcacacgtcacggtatcaatagacaggatactggtgctcttatgaga
tgttcctttgaagaaactgtggatgtgttgttggatgcgtcggctcatgctgaaacagat
cctatgagaggtgtatccgagaatattattatgggtcaattgccgaaaatgggaacaggt
tgtttcgatttgttgctggacgctgagaagtgtcgttatggtattgaaattgccaatact
ttgggatctagtatgttgggcggttcgggtatgttctttggagctgttgccacacccagt
atgtcaccaccacgtacgccctggattcaatgtggtactcccaaatatttgtcgccttct
ggacaaatgagtggcatgactcccggaggacccagcttttcaccctccgcagcttcagaa
gcctcgggaatgtctcccatatggtcaccagcccatcctggttcatcaccctcctctccg
ggaccggctatgtcacccttcttatcgccctcacccaatgtatcaccaccatcgtactcg
cccacaagtctcaactatacagcatcatcacccggcggagcatcacccagttactcacca
ctcagtccgagctattcgcctaccagtccagtttatgcctccagttcgcccagatactct
tcgactacacccattttcaatccacaatcaaccggttatctaccctcaaccagtggttac
tcaccatcatcaccggtctattctccaacatcgaatttacaatcgtccagtccttcatat
gctggcagtggttcgaatatgtattcaccagcgagtgcttattctccgacttcttcaaat
tattcaccaaattctccttcgtattcgccaacttctccctcgtattcgccttcaagtcct
tcgtattctccttcatcgccctgctactcacccacatcaccctcttattcaccctcatcg
cctacttatacaccagtaacgccttcatattcaccctcttcacccaactgttcgtcttct
ccacactattcaccagcctcgccggcttattcccaaacaggggtgaaatattcaccaaca
tcaccgaaatattcaccaccttctccttcgtacgatggttcaccgggttcaccgcaatat
acacccggctcaccacaatattcaccagcttcacccaaatattctcctacttctcctttg
tattcaccggcttcaccgcaacattcgccagccaatcaatacagtccaacaggttccagt
tattcggccacttctccccgttactcgcccaacatgtccatttattcgccgagcagcaca
aaatattcgccctcgtctcctcctacctacacaccaacacgtaattactctccagcttca
cccatgtactcgcccacagctccttctcacggttattcaccaactagtccggcctactcg
cccagtagtcctacctatgaggaaagtgatgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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