KEGG   Lacticaseibacillus paracasei BD-II: LCBD_1054
Entry
LCBD_1054         CDS       T01955                                 
Symbol
uvrA
Name
(GenBank) Excision endonuclease subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
lcs  Lacticaseibacillus paracasei BD-II
Pathway
lcs03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lcs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LCBD_1054 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcs03400]
    LCBD_1054 (uvrA)
DNA repair and recombination proteins [BR:lcs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LCBD_1054 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LCBD_1054 (uvrA)
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_16 RsgA_GTPase AAA_29 AAA_33 nSTAND1 nSTAND3 AAA_23 AAA_22 DnaJ_CXXCXGXG AAA_21 NACHT Viral_helicase1 AAA_14 AAA_18 cobW SLFN-g3_helicase T2SSE NB-ARC RNA_helicase BCA_ABC_TP_C Septin MMR_HSR1 DUF87 FtsK_SpoIIIE dNK
Other DBs
NCBI-ProteinID: AEA56552
UniProt: A0A806E846
Position
1026712..1029603
AA seq 963 aa
MANDKIVIHGARAHNLKNIDVTIPRNKLVVMTGLSGSGKSSLAFDTLYAEGQRRYVESLS
AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGHP
ICPNDGTPITSQSVEQMVDRVLALPDKTRIQILSPVVRRKKGSHKKVFAKIMREGYVRMR
VDGEVVDATADYELDKNKSHDIDIVIDRIVVKPEARSRLFDSFEAALRLSEGYANVDVIG
GEPLRFSEHFACPICGFTIGEMEPRLFSFNAPFGACPECDGLGVKLTVDMDLVLPEPSMT
LAEGAIAPWNPISSQYYPELLAQAAKTFKVRMDVPFNKLTHRERNVVLNGSDGKLFHFHY
ENDFGGVRDVDVPFEGVLNNISRRYAETNSDFTRQQMRSYMTALPCPVCHGKRLNRQALA
VKIEGRDIAEVSDLAIKDALPFFKTVHLSEAESVIAQPIVKEVVDRLTFLVNVGLGYLTL
SRSAGTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKKMRDLGNT
LIVVEHDEDTMRAADYLIDVGPGAGEHGGRIMASGTPKQVARVRKSITGQYLSGRKFIPV
PLKRRQGSGKVIRLEGATDHNLKNIDVDFPLGKFIVVSGVSGSGKSTLVNSILRRALAQK
LNHNSEKPGPYKKILGYKNIEKLINIDQSPIGRTPRSNPATYTSVFDDIRGLFAETNEAK
LRGYKKGRFSFNIKGGRCENCKGDGIIKIEMNFLPDVYVPCEVCHGKRYNSETLEVTYKG
KNIAEVLDMTVEEATDFFKNIPKIRRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLAS
ELQKLSTGKNFYILDEPTTGLHTDDIKRLLEVLERLVDEGNTVLVIEHNLDVVKTADWVI
DLGPEGGDGGGQIIATGTPEQVANVADSYTGQYLKPILVRDTQRTKEAAQTSTKNEVQAV
SKK
NT seq 2892 nt   +upstreamnt  +downstreamnt
atggcaaacgataaaattgtgatccatggggctcgtgcccacaatttaaagaatattgat
gtgacgattccccgcaataaactggtcgtgatgaccggcctatctggttcaggtaagtcc
agtctggcttttgacacgctttacgccgaaggtcagcgtcgttacgtggaaagtctctca
gcatatgccagacagtttctgggacagatggaaaaaccggatgtcgattcgattgacggc
ttaagtccggcgatttcgattgatcagaaaaccacttcaaaaaatccccgatcaactgtg
ggaacagtcactgaaatcaacgattacttgcgcttgctgtgggcacgtgtcgggcatccg
atttgtccaaatgatggcacaccgattaccagtcaaagtgttgaacagatggtggatcgc
gttttagccttacctgataagacccggattcaaattctgtcaccagtggtgcgtcgcaag
aaaggcagtcataaaaaagtcttcgccaaaatcatgcgtgaaggttatgtccggatgcgt
gttgatggtgaagttgttgatgcaacggctgattatgaactggataaaaataagtcgcat
gacattgatattgtgattgaccgaattgtggttaagcctgaggcgcgcagtcggcttttc
gactcatttgaagcagctctgcggttgtcagaagggtatgccaacgtggacgtgattggc
ggtgaaccactgcgcttttccgaacattttgcctgcccgatttgtggctttacgattggc
gaaatggaaccacgactattttcattcaacgctccttttggcgcttgcccagaatgtgac
gggttgggtgttaagctgacagttgacatggatttggtgctgccagaaccgagtatgact
ttggcagaaggggcaatcgcgccatggaatccaatcagttcccagtactatccggaactg
ctggctcaggcggcgaaaaccttcaaagtacgaatggacgtaccctttaacaagctgacc
caccgtgagcggaatgtggtgcttaatgggagcgacggcaagttattccattttcattat
gaaaatgactttggcggtgtacgcgatgttgatgtgccttttgaaggggtgctgaataac
atttcccgtcgatatgcagaaacgaatagtgactttactcgccagcagatgcgcagttat
atgacagcattgccgtgcccggtttgtcacggcaagcggctgaatcggcaggctttggct
gttaaaattgaaggtcgcgatattgcagaagtttctgatcttgccatcaaggatgcccta
ccatttttcaaaaccgtgcatcttagtgaagccgaaagcgtcattgcccaaccaatcgtg
aaagaagtcgttgaccgcttgacattcttggtcaacgttggtcttggttatctcacattg
agtcgtagtgctggtacactatccggcggcgaggctcagcgaattcgcctagctacccaa
atcggttcgaatctgagcggcgtcatgtatgtgcttgatgaaccatctatcggcttgcat
cagcgcgacaacgatcgcctgattgcctccttgaaaaaaatgcgcgatcttggcaacacg
ttgatcgtggtcgaacatgatgaagatacgatgcgcgccgccgattatctgattgatgtc
ggaccgggggctggcgaacacggtggccgcatcatggcatccggtacccctaaacaagtt
gcacgtgtgcgcaaatcaatcactggccaatatttatcagggcgcaagtttattccggta
ccactaaaacggcgacaaggtagtggcaaagtgattcgtttggagggcgccactgaccac
aacttaaaaaacatcgacgttgattttccattaggtaaattcatcgtggtttctggtgtt
tctgggtcaggtaaatctactttggttaactcgattcttcggcgtgcattggctcaaaag
ttaaatcataattctgagaaaccgggtccatacaaaaagattcttggctataaaaatatt
gaaaagctgatcaatattgaccaaagtccaattggccgcacaccgcgaagcaatccggct
acctatacgagtgttttcgatgacattcgcgggctatttgccgaaaccaacgaagctaaa
ttacgtggttacaaaaaaggccgctttagtttcaacattaagggtggtcgctgtgagaac
tgtaaaggcgacgggatcatcaagattgaaatgaactttttacctgatgtttacgtgcct
tgcgaagtttgccatggcaaacggtataactctgaaaccctcgaagtaacatataagggc
aagaatattgctgaagtgcttgatatgactgtcgaagaagccactgacttcttcaagaat
attccaaagattcggcgcaagttgcaaaccatcgtggatgttggccttggttacgttaag
ctgggacaaagcgctaccaccttgtctggtggcgaggctcaacggatgaagcttgcaagc
gaactgcagaagctttcaaccggcaagaatttttatattcttgacgaacccaccactggt
ctgcatacggatgatatcaagcggctgctggaagtgttggaacggctagtcgatgaaggc
aataccgtactggttatcgagcataatctagatgtcgtcaaaacagctgactgggtcatt
gatcttggccctgaaggcggagacggcggcggtcagatcatcgccaccggcacacctgaa
caggtggccaatgtggccgatagttatactggccaatacttgaaaccaatcctcgttcgc
gacactcaacggactaaggaagctgcgcaaacatcaactaagaatgaggtgcaggcagta
agcaagaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (29)   
   Pfam (29)   
All databases (37)   

Download RDF
DBGET integrated database retrieval system