KEGG   Companilactobacillus crustorum: BI355_0398
Entry
BI355_0398        CDS       T04712                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lct  Companilactobacillus crustorum
Pathway
lct03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BI355_0398
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lct03021]
    BI355_0398
   03400 DNA repair and recombination proteins [BR:lct03400]
    BI355_0398
Enzymes [BR:lct01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BI355_0398
Transcription machinery [BR:lct03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BI355_0398
DNA repair and recombination proteins [BR:lct03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BI355_0398
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887 EF-hand_8
Other DBs
NCBI-ProteinID: APU70750
Position
435993..439610
AA seq 1205 aa
MKNLTYHNVNYGAHRVRRSYAKIKEVLPLPNLIDIQTNSYNWFLDEGLKDMFDDIMPIDD
FAGNLSLEYVDYKLLEPKYTVDEARQHDANYSAPLHVTLKLTNHETGEIKTQDVFFGDFP
LMTDEGNFIINGAERVIVSQLVRSPGIYYNQDTDKNGRINYGTTVIPNRGAWLEYETDAK
GLGYVRIDRTRKLPISELVRALGFGEDSEILDIFGDNDTLNLTLEKDVHKDTSDSRVEEA
LKDIYERLRPGEPKTADSSRSLLYARFFDPRRYDLAPVGRYKINKKLNLKTRLLNKTLAE
TLADPDTGEVVLAKDTLIDRDAMNKLTPYLERDDFKTVTLQPSDEGVLTDPVTVQIIKVY
SETDNEKVVNMIGNGHIPETNRTITPADILAGINYFLNLKEGIGNTDDIDHLGNRRIRSV
GELLQNQFRIGLSRMERVVRERMSIQDSSTVTPQQLINIRPVVASIKEFFGSSQLSQFMD
QTNPLGELEHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLA
SYAIINKYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYVVAQANTPLNDDGSFTDDTI
LARHKDDNIETSPEKVDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLIN
PHAPLVGTGMEYIAAHDSGAALLASHAGVVEYVDAKKITIKRDEDGTTDDYKVTKFRRSN
NGKSYNQRPIVHKDEKVKKGEIIADGPAMENGELALGQNPLIAFMTWNMYNYEDAIVLSE
KLVREDAYTSIHIEEYESEARDTKLGPEEITREIPNVGEDSLKDLDEFGIIRVGAEVRDG
DILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKVFTREAGD
ELDPGVNMLVRVYIAQKRKIQVGDKMSGRHGNKGTVSIVVPEEDMPYMPDGTPVDILLNP
MGVPSRMNIGQVLDLHLGMAARKLGIHVSTPVFDGVSNDELWDIVKEADMDSDGKSILYD
GRTGEPFKNRVAVGVMYYLKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTYKSDDIVGRVKTYEAIVKGESIPKPGVPESFRVLVKELQALG
LDMKVLDSHKKEIELRDMDDDEDTVSIDALSKFAKQQEQKRAEEEAKKLEASKDSAESTS
TKSEN
NT seq 3618 nt   +upstreamnt  +downstreamnt
gtgaaaaatttgacttatcataacgttaattatggtgcacaccgtgttcgtcgtagttat
gcaaagatcaaggaagtacttcctttgccaaatttgattgacatccaaacaaattcttat
aactggttcttagatgaaggacttaaagatatgtttgatgatattatgccaatcgatgat
tttgcaggaaatctttctttggaatacgtcgattacaagttgctcgaaccaaaatatact
gttgatgaagcaagacaacatgatgctaactactcagcaccattacatgtaactttaaaa
ttgactaatcatgaaactggtgaaatcaagactcaagatgttttctttggtgacttccca
ctcatgacagatgaaggtaatttcatcatcaacggtgctgaacgtgttattgtttcccaa
ttagtacgttctcctggtatttattacaatcaagatacagataagaatggtcgtatcaat
tatggtacaactgttatccctaaccgtggtgcttggttggaatatgaaacagatgctaaa
ggtttaggttatgtaagaatcgatagaactagaaaattacctatttctgaattagttaga
gctcttggttttggcgaagattctgaaattcttgatatttttggcgataacgatactttg
aaccttactcttgaaaaagatgttcataaggatacaagtgactcacgtgttgaggaagct
ttaaaggatatctatgaaagactccgtcctggtgaaccaaagactgcagatagttctcgt
tcattgctatatgctagattctttgacccacgtagatatgatttagctcccgttggtcgt
tacaagatcaataagaagttaaaccttaagacaagacttttgaataagactttggctgaa
acattagctgatccagacactggtgaagttgtgcttgctaaagatactttaattgaccgt
gatgcaatgaacaaacttactccttatcttgaaagagatgactttaagactgttacatta
caaccttctgatgagggtgtcttaacagacccagtcactgttcaaattattaaagtatat
tcagaaactgacaatgaaaaagttgttaatatgatcggtaatggtcatattccagaaaca
aaccgtacaattacaccagctgatattttggcaggtatcaattacttcttgaacttaaaa
gaaggcattggtaacactgatgatattgatcacttgggtaatcgtcgtattcgttcagtt
ggtgaattgttacaaaaccaattccgtattggtttgtcacgtatggaacgtgttgtacgt
gaaagaatgtcaattcaagattcatctactgttacacctcaacaattgattaatatcaga
ccagttgttgcttcaattaaggaattctttggttcatcacaattgtcacaattcatggat
caaactaatccacttggagaactagaacacaagcgtcgtctatcagctcttggacctggt
ggtttgactcgtgatcgtgccggatatgaagttcgtgatgttcactatactcattatggt
cgtatgtgtcctattgaaactcccgaaggtcctaatatcggacttattaataacttggct
tcatatgccattattaacaagtatggtttcattgaaactccatatcgtcgtgtttcatgg
gatactcataaagttactgataagatcgattatttgactgctgatgaggaagataactat
gttgttgcccaagcaaatacaccattaaatgatgatggttcatttactgacgatactatc
ttggctcgtcacaaggatgacaatattgaaacaagtcctgaaaaagtcgattacatggat
gtttctcctaaacaagtagtttctgtagctactgcatgtattcctttcttggaaaatgat
gattctaaccgtgctttgatgggtgctaacatgcaacgtcaagctgttcctttgatcaat
ccacatgctccacttgttggtactggtatggaatatattgctgcccatgattctggtgct
gccttgttggctagccatgctggtgtagttgaatatgttgatgctaagaagatcactatc
aaacgtgatgaagatggtacaactgacgattacaaagtaactaagttccgtcgttcaaat
aatggtaagagttacaaccaaagacctattgtccacaaggatgaaaaggttaagaagggt
gaaattattgccgatggtcctgctatggaaaacggcgaattagctcttggtcaaaaccca
cttatcgcctttatgacatggaacatgtataactatgaagatgcgattgttctttcagag
aaattagttcgtgaagatgcatatacttcaattcatattgaagaatacgaatcagaagca
cgtgatactaaacttggacctgaggaaatcactcgtgaaattcctaatgttggtgaagat
tcattgaaggatcttgacgaattcggaattatccgtgttggtgctgaagtgcgcgatggc
gatatcttagttggtaaagttacacctaagggtgttactgaattatcagccgaagaaaga
ttgctacatgctatctttggtgaaaaagctcgtgaagttcgtgatacttcacttcgtgta
ccacatggtggtggcggaattatccaagacgttaaagtctttactcgtgaagccggagac
gaacttgatcctggtgttaacatgttagttcgtgtttacattgctcaaaagcgtaagatt
caagttggtgacaagatgtcaggtcgtcatggtaacaaaggtactgtttcaattgttgta
cctgaagaagatatgccatatatgccagatggtactccagtagacattctattgaaccca
atgggtgttccatcacgtatgaatattggacaagttcttgatcttcacttaggtatggct
gctagaaaacttggtatccatgtttcaacacctgtttttgatggtgtaagcaatgacgaa
ctttgggacattgttaaggaagctgatatggattcagatggtaagtcaattctttatgat
ggacgtactggtgaaccattcaagaatcgtgttgctgttggtgtcatgtactacttgaaa
ctagctcacatggttgatgataaacttcatgctcgttcaatcggaccatactcactagtt
actcaacaaccacttggtggtaaagcacaatttggtggtcagagatttggtgaaatggaa
gtttgggctcttgaagcttatggtgccgcatatacactacaagaaatcttgacatacaag
tctgatgatatcgttggacgtgttaagacttatgaggctatcgtcaagggtgaaagtatt
cctaaacctggtgttcctgaatcattccgtgttcttgttaaagaattacaagctctagga
ctagacatgaaggtcttagattcacataagaaagaaattgaacttagagatatggacgat
gatgaagatactgtaagtattgacgctctatctaagtttgctaaacaacaagaacaaaaa
cgtgctgaagaagaagctaaaaagctcgaagcatctaaagattcagccgaatcaactagt
acaaaatcagaaaactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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