KEGG   Lacticaseibacillus paracasei W56: BN194_11930
Entry
BN194_11930       CDS       T02337                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lcw  Lacticaseibacillus paracasei W56
Pathway
lcw03030  DNA replication
lcw03410  Base excision repair
lcw03420  Nucleotide excision repair
lcw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lcw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN194_11930 (ligA)
   03410 Base excision repair
    BN194_11930 (ligA)
   03420 Nucleotide excision repair
    BN194_11930 (ligA)
   03430 Mismatch repair
    BN194_11930 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcw03032]
    BN194_11930 (ligA)
   03400 DNA repair and recombination proteins [BR:lcw03400]
    BN194_11930 (ligA)
Enzymes [BR:lcw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BN194_11930 (ligA)
DNA replication proteins [BR:lcw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BN194_11930 (ligA)
DNA repair and recombination proteins [BR:lcw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BN194_11930 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BN194_11930 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BN194_11930 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BN194_11930 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH_8 HHH HHH_3 zf-NADH-PPase
Other DBs
NCBI-ProteinID: CCK22140
UniProt: A0A5Q8BS42
Position
1171321..1173345
AA seq 674 aa
MLAKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYP
KLVTPDSPTQEVGDVINSDFAKVQHPIPMLSMGDVFSFEELSEWDARMQSNVGHPVDYNV
ELKIDGLALSLIYENGKLVQGSTRGDGNVGEDVTRNVLTIASVPKQLKQPLSLEVRGECY
MPKAAFAKLNARQETEGGTPFANPRNAAAGSLRQLDAKVTAARELDTFIYTLIEPEQFNV
TTQHEAIAFMQALGFTTNPSSEVAGDMQAIDTYIKKYTTDRDALPYGIDGIVLKVNDLAL
QAQLGNTVKVPRWEIAYKFPPEEAETVIHDIVWTVGRTGVVTPTAVMDPVQLAGTTVARA
TLHNADMIRDKDIRIGDTVMLHKAGDIIPEVSRVLVAKRPVDTPPAPIPEACPSCGQKLV
HLDDEVALRCINPMCPAQVQEQLTHFASRNAMNIDGLGPKIVAQLQAKHLVKDVADLYHL
TAADLAKLDKFKEKSINNLLSAINNSRQNSVERLIFGLGIRHVGGKAARILAEHFGDLDH
LMTASQEAIADVPNIGPTIAEAIVTYFKAATVQKLITQLREADVNLRYTGPTKPVVKDSF
VAGKTVVITGKFAEFSRPALTKQLEGLGAKVTGSVSKKTDLLIAGDAAGSKLAKAQSLNV
PIMNETELLANLKD
NT seq 2025 nt   +upstreamnt  +downstreamnt
gtgttagcaaaaccagctgcacaattcacacttgaagaagctcaggcggaagtcgaaaag
cttcggaagcaactgaatcaatggcgtcttgagtattacaccaaggatgcgccaactgtg
accgataacgtctatgacgatcattatcgcgatttacaggcactcgaggaggcttatccc
aagctagtcacgcctgattcgccaactcaagaagtcggcgatgtcattaattcggacttt
gccaaggtgcaacacccaattccgatgttgtcgatgggcgatgttttttcgttcgaagag
ctgagtgaatgggatgctcgcatgcaaagcaatgtcggccatccggtggattacaatgtt
gagttgaaaatcgacgggttggctttatctctgatttatgaaaacggcaaactcgttcaa
ggctcaacacgtggtgatggtaatgtcggtgaagatgtgaccagaaatgtgttgaccatt
gcgtcagttcccaagcagttaaagcagccactttcactcgaggtacggggtgaatgttat
atgcctaaggcggcgtttgccaagctgaatgcgcggcaggaaactgagggtggcacgcct
tttgccaatccacgtaacgcggcagctggatcactccgacagttagatgcaaaagtcacc
gctgctcgagagctggataccttcatttatacgttaattgaaccagagcagtttaacgtg
accacgcagcatgaggcgattgcgtttatgcaggcacttggatttacaacaaatccaagt
tcagaagtggctggtgacatgcaggcgattgacacctacattaagaagtacaccaccgac
cgtgatgcgttgccttacggaattgatgggatcgttttgaaagtgaacgatttggcgctg
caagcgcaactaggcaacaccgttaaagtgccacgctgggaaattgcctacaaattccca
cctgaagaagcagagaccgtcattcatgacattgtctggacagttggtcgaaccggtgtg
gtcacgccgactgccgtgatggaccccgttcagcttgctggaaccacagtggcacgggcc
acgttgcacaacgcggatatgattcgtgataaagatattcgcatcggcgacaccgtcatg
ttgcacaaagcaggcgacattattcctgaagtttcgcgggtactggttgctaaacgtcca
gtggatacgccaccggcgccgattccagaggcctgcccatcatgtggccaaaaactggtc
catctcgacgatgaagtagctttgcgttgcatcaacccgatgtgtccggcacaggtccaa
gagcagctcacccattttgcgtctcgcaacgcgatgaatatcgatggcttaggcccgaag
attgtggcacagttgcaggccaagcatctggtaaaagatgtcgctgatttgtatcacctc
acagctgcggatctggcgaaattagataagtttaaagaaaaatcaattaataatttgtta
agtgcgatcaacaacagtcggcaaaactcggtagaacgcctaatctttgggttgggcatt
cggcacgttggcggtaaagccgcacgaattctggccgagcatttcggcgatttggatcat
ctgatgaccgccagtcaagaggcgatcgcagatgtgccaaatatcgggccgaccattgcg
gaagcgatcgtgacgtattttaaagccgcaacggttcaaaagttgatcactcagttgcgc
gaagctgatgttaacctgcgttacaccggaccgaccaaaccagtggtcaaagatagtttt
gttgcaggtaaaaccgttgtgattaccggtaagtttgccgagttttcgcggccagcactc
acgaagcagctagaaggattaggagccaaggtcacaggttcggtttcaaagaaaacggac
ctcctgatcgctggcgacgcggctggcagtaagttggcaaaggcacaaagcttgaatgtc
ccaatcatgaatgagacggaattgctggcgaatttgaaggattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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