KEGG   Lacticaseibacillus paracasei W56: BN194_26330
Entry
BN194_26330       CDS       T02337                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lcw  Lacticaseibacillus paracasei W56
Pathway
lcw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lcw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BN194_26330 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcw03021]
    BN194_26330 (rpoC)
   03400 DNA repair and recombination proteins [BR:lcw03400]
    BN194_26330 (rpoC)
Enzymes [BR:lcw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BN194_26330 (rpoC)
Transcription machinery [BR:lcw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BN194_26330 (rpoC)
DNA repair and recombination proteins [BR:lcw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BN194_26330 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C DUF4090
Other DBs
NCBI-ProteinID: CCK23580
UniProt: K0NAN3
Position
complement(2624483..2628145)
AA seq 1220 aa
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ
DVELDKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRIGIA
TNSFTDKPFTDDQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DINDYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVEAAHKKVATVSKQFRRGLITDEERHDRVIQTWNDAKDDIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLSVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVSAIREGNEMIEPLY
DRLVGRFTMKDVLDPKSGEVLVKRNTLMDEDTAQMIVDAGVESVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEITAIDENPAEHTREITVKGETDTRTYSVPYASSVAVAEGDHI
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLIGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKAKDGQQGDTDKK
NT seq 3663 nt   +upstreamnt  +downstreamnt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccagataaaatc
cgtagctggtcctatggggaagttaaaaaacctgagaccatcaactaccggacgttaaaa
cctgagcgggacggcttgttcgatgaacgcatcttcggaccgaccaaggactgggaatgt
gcctgtggcaagtacaagcggattcgttataagggaatcgtttgtgatcgctgcggtgtt
gaagttactcgttccaaggttcgccgtgagcggatgggtcatatcgaactagccgcaccg
gttacccacatctggtacttcaagggcatcccaagtcggatgggtctggtactggacatg
tcaccgcggtcactcgaagagatcatttattttgcgtcctacgttgtgatcgatcctggc
gatacgccgatggagaaaaagcagctcctgaccgaacgtgaatatcgtgaaaaacgcgaa
gaatacggtcaaaccttcaatgccaagatgggtgccgaagccatcaaggaattgttgcag
gatgttgagcttgataaagaagttgccgaattaaaggaagacctgaagtcagcccaaggc
cagaagcggacccgtgcgattcgccggttggatattctggatgccttcaaggaatccggt
aatgatccagcttggatggtcatggacacgatcccagttatcccaccggatctgcggcca
atggttcaacttgaaggtggccgttttgccacttccgatctgaacgacttgtatcgacgg
gttatcaaccgaaataatcggttgaagcgcctgcttgatctcaatgcgccaagtatcatt
gttcaaaacgaaaagcgtatgctgcaggaagcggttgatgctttgattgataatggtcgt
cgtggccgtccggttacggggccaggcaatcgcccgctcaagtccctgtcacacatgctg
aaagggaagcaaggccggttccgtcagaacttgcttggtaagcgtgtcgattactccggc
cgttccgttattgatgtcggcccatggctgaagttctatcaatgcggtgtaccacgtgaa
atggcattggaactgttcaagccatttgtgatgcgcgaattggttaagcgcgacatggct
agcaacatcaagaatgctcgtcgcaagattgatcggcaagatgatgatgtttgggacgtg
cttgaagatgtcatcaaggaacgtccagtgctgttgaaccgtgcacctaccttgcatcga
cttgggattcaggcatttgaacctgtccttgttgatgggaagtccatccggttgcacccg
ctggtctgcgaagcttataacgctgactttgatggtgaccagatggcgatccatgtaccg
ctatctgacgaagcgatggctgaagcacggatgctgatgttggctgcacaccatattttg
gcaccaaaagatggcaagccaatcgttacgccatcacaggacgttgtgctgggtaactac
tacctgaccatggaacaaaaaggccgcgaaggtgaaggcatgatctttaaggacaccaac
gaagtgttgatggccttgcaaaacggttatgtccacttgcacagccgcatcgggattgcg
actaattcctttacggacaagccgtttaccgatgatcagaaacaaaagatcatggtcacc
agtgttggtaaggcgatctttaacgagattatgccgaaagacttcccatatttgaatgaa
ccgacgcaggataacatcgtcaatggtgtgccggataagtatttcatcgataagggtgaa
gacatcaacgactaccttgaagatgcaccgttaatcgatccattcaagaaaggcttcctg
tctgacatcattgcgcaagtcttcaaggtctataaagttcaacggaccagtgatttgctg
gatgatatgaagactttgggctatacgcagtccactaactctggcttgactgtcgggatc
gctgacattactaacttgaaggaaaagcctgaaattgtcgaagctgcccataagaaggtt
gccactgtttccaagcagttccgtcgtgggttgattaccgacgaggaacggcatgatcgg
gttatccagacctggaatgatgccaaagatgatattcagcagaagctggttgattcgttt
gacccgaacaacccaatttcgatgatgtccgattcaggtgctcgtggtaacatttctaac
tttacacagcttgccggcatgcgtggtctgatggctgcgccaaacggtgggatgatggaa
gtgcctgttatctcgaacttccgtgagggcctgtccgtcatggaaatgttcatgtcaact
cacggtgctcgtaaagggatgaccgatacggcgctgaagacggctgattcaggttatctg
actcggcggctggttgatgttgcacaggatgtcattgttcgtgaagaggactgcggtacc
gaccgtggcttagttgtcagtgctatccgtgaaggtaatgaaatgatcgaaccgttgtat
gatcgactggttggtcgtttcaccatgaaggatgtgctggatccgaagagtggcgaagtg
ctcgtcaagcgcaataccttgatggacgaagatactgctcagatgatcgtggatgccggg
gttgaatccgtcacgatccgttcggtcttcacttgcaacaccaaacatggtgtctgccag
aagtgctacggtcgtaacatggccactggcgaacaagttgaagtcggcgaagctgtcggg
actgttgctgcgcaatctatcggtgaacctggtacccagctgaccatgcggaacttccat
actggcggtgttgccggtggcgaagatattacgcaagggctgcctcgtgttcaggaaatc
tttgaagctcgtaaccctaaaggcgaagctgtgattacggaagtgaccggtgaaattacg
gcgattgacgaaaatccagctgagcacacacgggaaatcacggtcaaaggtgaaaccgac
acccggacttacagcgtgccatatgcttccagtgtggcagttgctgaaggcgaccacatt
aatcgtggcgaacgcctgactggtggttcgattgatcctaagcaattgattaaagtgcgc
gatgtcatggccaccgaaaattacctgctttctgaagttcagaaagtttaccgtatgcaa
ggtgttgatatcggcgataagcacgttgaagtgatggtccgccagatgctgcgcaagatc
cgggtcatggatccaggcgacaccaacatcttgccaggaaccttactcgatattgctgac
tttaaggaaaagaatacgcaggcaattatcagtggcggtatccctgctactggccggcca
gttctactggggatcaccaaggcttccttggagaccaacagtttcctgtctgccgcttcc
ttccaggaaacgacacgggtattgaccgatgcctcgattcgcggcaagaacgatccgctg
atcggtttgaaggaaaatgtcatcattgggaagatcattccggctggtaccgggatggca
acgtatcgacacgaagaaccaaagagtgtcggcaccgtttccgacagtgtctattcgatt
tcagacatcgaaaagcaaatgaaagcaaaagacggccagcaaggcgatacggacaaaaag
taa

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