KEGG   Lacticaseibacillus casei 12A: LCA12A_2009
Entry
LCA12A_2009       CDS       T03665                                 
Name
(GenBank) heat shock protein 60 family chaperone
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
lcx  Lacticaseibacillus casei 12A
Pathway
lcx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LCA12A_2009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcx03019]
    LCA12A_2009
   03110 Chaperones and folding catalysts [BR:lcx03110]
    LCA12A_2009
   03029 Mitochondrial biogenesis [BR:lcx03029]
    LCA12A_2009
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcx04147]
    LCA12A_2009
Enzymes [BR:lcx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     LCA12A_2009
Messenger RNA biogenesis [BR:lcx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LCA12A_2009
Chaperones and folding catalysts [BR:lcx03110]
 Heat shock proteins
  HSP60 / Chaperonin
   LCA12A_2009
Mitochondrial biogenesis [BR:lcx03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    LCA12A_2009
Exosome [BR:lcx04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   LCA12A_2009
  Exosomal proteins of other body fluids (saliva and urine)
   LCA12A_2009
  Exosomal proteins of breast cancer cells
   LCA12A_2009
  Exosomal proteins of colorectal cancer cells
   LCA12A_2009
  Exosomal proteins of bladder cancer cells
   LCA12A_2009
SSDB
Motif
Pfam: Cpn60_TCP1
Other DBs
NCBI-ProteinID: EKP97042
Position
complement(2208329..2209963)
AA seq 544 aa
MAKEIKFSEDARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSID
LEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIE
KATKAAVDELHKISHKVNGKKEIAQVASVSSSNTEVGSLIADAMEKVGHDGVITIEESKG
IDTELSVVEGMQFDRGYLSQYMVTDNDKMEADLDDPYILITDKKISNIQDILPLLQEIVQ
QGKALLIIADDVAGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLEDIATLTGGTVIS
SDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDR
EKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDV
LPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATD
EWEDMAKSGIIDPTKVTRSALQNAASVAALMLTTEAVVADKPDPNANNNAAAGANPAAGM
GGMM
NT seq 1635 nt   +upstreamnt  +downstreamnt
atggcaaaagaaattaaattctctgaagacgcacgtgctgcaatgctgcgcggcgttgat
cagttggcaaacacagttaagacaaccttaggaccaaaaggccgcaacgttgttttggac
aagagctatggctcaccggaaattaccaatgacggtgtcacaattgcgaagtccattgac
ttggaagatcactacgaaaacatgggcgccaagttggttgccgaagttgcttccaagaca
aatgacattgctggtgatggtaccacaaccgcaacggttttggcacaaagtattatccgc
gaaggcatgaagaacgttacagccggtgctaatcctgttggcattcgcacagggattgaa
aaggcaactaaggctgccgttgacgaattgcacaagattagccacaaagttaatggtaag
aaagaaatcgcgcaggttgcgtccgtttcttcctcaaatacagaagttggtagtctgatt
gctgacgccatggaaaaagtcggccacgatggtgtgattaccattgaagaaagcaaaggg
attgacactgaactctctgttgttgaagggatgcagtttgatcgcggctatctgagccaa
tacatggttaccgataatgataagatggaagctgaccttgacgatccttatatcttgatc
accgacaaaaagatttccaatattcaggacattttgccgctgttacaagaaatcgttcaa
caaggtaaggcactgttgatcattgctgatgacgttgctggtgaagcattgccaacctta
gttctgaacaagattcgtggtacctttaatgttgttgcggttaaggcccctggctttggt
gatcggcgtaaggctcagcttgaagatattgctaccttgactggtggtaccgtgatcagt
tctgaccttggcttggatcttaaagacactaagcttgaacaattgggtcgcgccggcaag
gtaacggttaccaaggacaacaccacgattgttgatggcgctggctctaaggatgccatt
gctgaacgggttaatatcatcaagaagcaaattgatgacacgaccagtgacttcgaccgt
gaaaagttgcaagagcgtttggctaagttagctggcggtgttgcggttgtcaaggttggt
gccgctactgaaactgaattgaaggaacgcaagtatcggatcgaagatgctttgaatgcg
acccgtgccgcggttgaagaaggttacgttgctggcggcggtacagctctggtagatgtt
ttgcctgcagttgctgctttgaaagaagaaggcgacgttcaaaccgggatcaacatcgtg
ctacgtgcgcttgaggaacctgttcgccagattgctgagaacgccggcaaagaaggttct
gtcatcgttgaacagctgaagaaggaaaagcaaggcgttggttacaatgccgctactgat
gaatgggaagatatggctaagtcaggtattattgacccaaccaaagtgacccgttctgca
ttgcaaaacgccgcttccgttgctgctttgatgctgacgactgaagccgttgttgctgac
aagccagatccaaatgcaaataataatgctgccgctggtgctaacccagcagcaggcatg
ggcggtatgatgtaa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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