KEGG   Loigolactobacillus coryniformis subsp. torquens: LC20004_03255
Entry
LC20004_03255     CDS       T05341                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lcy  Loigolactobacillus coryniformis subsp. torquens
Pathway
lcy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lcy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LC20004_03255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcy03021]
    LC20004_03255
   03400 DNA repair and recombination proteins [BR:lcy03400]
    LC20004_03255
Enzymes [BR:lcy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LC20004_03255
Transcription machinery [BR:lcy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LC20004_03255
DNA repair and recombination proteins [BR:lcy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LC20004_03255
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ATO42979
UniProt: A0A2D1KLH4
Position
694179..697769
AA seq 1196 aa
MAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQSNSYNWFLDEGLKEMFNDIMPIDDFAG
NLSLEFVDYELLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQNVFFGDFPLMT
DQGTFIINGAERVIVSQLVRSPGVYYNSEVDKNGRTIYGTTVIPNRGAWLELETDAKDIS
YVRIDRTRKIPMSELIRALGFGSDDDIIGMLGNNESLMLTMEKDVHKNADDSRVEEALKD
IYERLRPGEPKTADSSRSLLNARFFDPKRYDLAAVGRYKINKKLSLKTRLLNQTLAETLA
DPDTGEVIAQKGDVVDRQVMEKLSPYLDREDFMTTTYTPSDEGAVTDPMTLQTIKVESKR
NPETVVPIIGNGHIELSWKHIRPADIIASMNYFLNLQEGIGSTDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA
VVNKYGFIETPYRRVDWNTHKVTDKIDYLTADEEDNYVVAQANSLLNEDGSFVDDTVLAR
REEDNLEISVDRVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA
PLVGTGMEYKAAHDSGTAVVAKNAGTVEYVDAKQVRVRREDGSLDKYDLMKYRRSNSGKS
YNQRPIVKLGDHIDVSEILADGPAMENGELALGQNPIIAFMTWNMYNYEDAIVLSEKLVR
EDAYTSIHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEFGIVRIGAEVKDGDLLV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSP
GVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVVPEEDMPFLPDGTPVDICLSPMGVP
SRMNIGQVIELHLGMAARNLGIHVATPVFDGAQDQDIWAAVKEAGMDDDAKSVLYDGRTG
EPFANRVSVGVMYYMKLAHMVDDKMHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMK
VLDADKQEIELRDMDDEDDEVVSVDALSKFAKEQEAQKAKKAAEEAANASGDSDNK
NT seq 3591 nt   +upstreamnt  +downstreamnt
ttggcaggccatttagttaaatacggtaaacaccgcactcgtcgtagttattcacgaatt
aaagaagtgttagatctccctaacttgatcgagatccaaagtaattcgtataactggttc
ttggacgaaggcttgaaagaaatgttcaacgatatcatgccaattgatgatttcgctggc
aatctgtccttagaatttgttgattatgaattattagaacctaagtatacggtggaggaa
gcacggcaacatgatgccaactactctgcaccattacacgttacgttacgtttaactaac
catgaaactggcgaaattaaatcacagaacgttttctttggtgattttccgttaatgacc
gaccaaggtacctttattatcaatggtgctgaacgggttatcgtttcccagttagttcgt
tcaccaggggtttattacaacagtgaagtggataaaaatggtcgtacaatttatggtaca
accgttatccctaaccgtggtgcttggttagaattagaaactgatgctaaggatatttcc
tatgttcgaatcgaccggacacgtaagattcctatgtctgaattgatccgtgctttaggc
tttggttccgatgacgatattatcggcatgttaggtaataacgaaagcttaatgttaacg
atggaaaaagacgtccataagaatgcggacgattcgcgtgttgaagaagccttaaaagat
atctacgaacgactacgcccaggtgaaccaaaaactgccgatagctcacgtagtttattg
aatgcgcgcttcttcgatccgaaacgttatgatttagcagcggttggtcgttacaagatc
aacaaaaagttatccttaaaaacacgcttgttgaaccaaactttggcggaaacattagct
gatccagatactggtgaagttattgcccaaaagggtgatgtagttgatcgtcaagtaatg
gaaaaattaagcccatacttggaccgtgaagactttatgaccaccacttacacaccatct
gatgaaggtgcagttacagatccaatgacgctacaaacaatcaaggttgaatcaaaacgc
aatcctgaaacagttgtaccgatcattggtaatggtcatattgaattaagctggaaacac
attcgtcctgccgatattattgcttcaatgaactacttcttgaacttacaagaaggtatt
ggttcaactgatgatatcgaccatttaggtaaccgtcgtattcgctcagttggtgaatta
ttacaaaatcaattccgaatcggtttatcacggatggaacgtgtggttcgtgaacggatg
tcaattcaagacactagcacagttacaccacaacagttgatcaatattcggccagttgtc
gcttcaatcaaagaattctttggttcttcacaattgtcccagtttatggatcaaacgaat
ccattaggtgaattaacgcataagcgtcgtctatcagccttaggccctggtggtttaact
cgtgaccgtgccagttatgaagtccgggatgtgcactacacccattatggtcgtatgtgt
ccaatcgaaacacctgaaggtcctaacattggtttgatcaatagtttggctagttacgcc
gttgttaacaagtatggttttattgaaacaccatatcgccgtgtcgactggaatacacat
aaagttactgataagatcgactatttaactgccgatgaagaagataactatgttgttgcc
caggcaaactcgttgctaaacgaagacggctcatttgttgatgacaccgtattggctcgt
cgtgaagaagataacttggaaatttccgtggatcgtgtcgattacatggacgtttcgcct
aaacaggttgttgctgtcgctactgcctgcattcctttcttggaaaacgatgattctaac
cgtgccttgatgggtgctaacatgcaacgtcaggccgttcctttgatcaatccacatgca
ccattagttgggactggtatggaatataaagccgcccatgactctgggactgctgttgtt
gctaagaacgctggtacagttgaatatgttgatgctaaacaagttcgtgttcggcgtgaa
gatggttcattagataaatatgatttaatgaaatatcgtcgttcaaactcaggtaagagt
tataaccaacgtccaatcgttaaacttggcgatcatattgacgttagcgaaatcttagct
gatggtccagccatggaaaatggggaacttgccttaggtcagaacccaattattgccttc
atgacttggaatatgtacaactatgaagatgcaatcgtcttatccgaaaaattagttcgc
gaagatgcttatacgtcgatccatattgaagaatatgaatcagaagcacgtgatactaaa
ttaggacctgaagaaattacccgtgaaattcctaacgtcggtgaagatgcgttgaaagac
cttgatgaattcgggatcgtccgcattggtgctgaagttaaggatggcgatttgttagtc
ggtaaggtgacacctaaaggggttacggaactttctgcagaagaacggttattgcatgca
atcttcggtgaaaaagcgcgtgaagtccgtgatacgtcactccgtgtacctcatggtggc
ggtgggattatccaagacgttaagatctttacccgtgaagctggtgatgaattatcacct
ggtgttaatatgatggttcgtgtttatatcgcccagaaacgtaagatccaagtcggcgat
aaaatggccggccgtcatggtaacaaagggacggtttcaatcgttgtccctgaagaggat
atgccattcttaccagatggtacgccagttgatatctgcttgagcccaatgggtgtgcct
tcccgtatgaacatcggtcaggtgatcgaattgcatttagggatggccgcacgtaattta
ggtattcatgtagcaacacctgtctttgatggtgcacaggatcaagatatctgggcagcc
gttaaggaagccggcatggatgacgatgcgaagtcagttctttatgatggccgcaccggt
gaaccatttgctaaccgtgtttctgtcggggttatgtactacatgaagttagcccacatg
gttgatgataagatgcatgctcgttcgatcggaccttactcattagttacgcaacaacca
ttaggtggtaaagcccaatttggtggtcagcgtttcggtgaaatggaagtttgggccctt
gaagcttacggtgcagcttataccttacaagaaatcttgacttacaagtctgatgacgtg
gttggtcgtgtcaagacctacgaagccattgtcaaaggtgaaccaattccaaaaccaggt
gttccggaatcattccgtgtcttggtcaaagaattacaatcacttggtctagatatgaaa
gtcttagatgctgacaagcaagaaattgaattacgcgacatggacgatgaagacgatgaa
gtcgttagcgtcgatgctttgagcaagtttgccaaagagcaagaagcacaaaaggcaaag
aaggctgcagaagaagcagctaatgctagcggcgacagcgacaacaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system